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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0007.Seq
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           36   0.035
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    30   2.3  
09_01_0019 + 403078-404211                                             30   2.3  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    29   4.0  
10_08_1037 - 22477358-22478752                                         29   5.3  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    29   5.3  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    29   5.3  
10_08_0203 + 15776521-15776656,15776662-15776819                       28   9.2  
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662...    28   9.2  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.2  
01_01_0803 + 6252721-6252736,6252807-6253252,6253372-6253613,625...    28   9.2  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 563 PITRLVRVPNRYFSSLPPRAGSG*FARLLASLDVVAVSQAPSPESNP--DSPLPVTTMVV 736
           P ++L   P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 737 AELPSK 754
            EL  +
Sbjct: 146 IELDDR 151


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 288  CRPTSTLTAAHRDRXLILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 467
            C    +   +  D+ L+L R+  +      MLR    +TA+A  +++  K   E  ++NN
Sbjct: 1045 CAAAKSAAQSEHDKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNN 1104

Query: 468  FSIRY 482
             S+ Y
Sbjct: 1105 SSLEY 1109


>09_01_0019 + 403078-404211
          Length = 377

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 711 GESGFDSGEGA*ETATTSKEASRRANYPLPARGGSDEK*RFG 586
           G S  DSG GA ++A   K +SRR  +      GSD   R G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +2

Query: 134 IRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHR 313
           I+M P  P  H+L     N     +    P   YSS+I   F H+N F   +   L TH 
Sbjct: 53  IKMVPPGP--HFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTHP 110

Query: 314 S 316
           S
Sbjct: 111 S 111


>10_08_1037 - 22477358-22478752
          Length = 464

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 563 PITRLVRV-PNRYFSSLPPRAGSG*FARLLASLDVVAVSQAPSPESNPDSPLPVTTMVVA 739
           P+T  +R+  N  FS+ PP A     A   A+       QAP    +P  P PV +  + 
Sbjct: 324 PVTAYMRILENSLFSATPPGAA----AAAAAAAAAATGQQAPPHHPHPPPPPPVPSPGIL 379

Query: 740 ELPS 751
             PS
Sbjct: 380 PSPS 383


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFE 262
           I H L +LK  KI P   +I  C +YS    S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 146 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           P+  +  YLG+   NK+ P+ Y +  C K+ +  FS++ H++  K
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLND-FSKY-HNHALK 289


>10_08_0203 + 15776521-15776656,15776662-15776819
          Length = 97

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 756 NFDGSSATTMVVTGNGESGFDSGEGA*ETATTSKEASRRANYPLPA 619
           N D   A TM + G+G SG   G G   +AT   + S  AN  + A
Sbjct: 40  NDDDDGAATMELEGSGSSGTTIGRGG--SATPGPQPSLTANVVMTA 83


>04_04_1225 -
           31865556-31865590,31865687-31865734,31866179-31866262,
           31866336-31866395,31866589-31866642,31866747-31867710
          Length = 414

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 383 EHIVGEPAF*KTPVQYQXPIAVSCGECRGGPTI 285
           EH+  +P     P++   P+  SC E  GG T+
Sbjct: 272 EHVNPQPLSAVVPIKSGQPVLASCKEVAGGKTV 304


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 459 RNNFSIRYWSWNYRGC 506
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>01_01_0803 +
           6252721-6252736,6252807-6253252,6253372-6253613,
           6253753-6253849,6253984-6254167,6254241-6254322,
           6254602-6254647,6255473-6255490
          Length = 376

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 635 FARLLASLDVVAVSQAPSPESNPDSPLPVT 724
           F+RL+A L V  +++AP   + PD P+ VT
Sbjct: 128 FSRLVAGLPV-GMAEAPDHPARPDKPIVVT 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,943,161
Number of Sequences: 37544
Number of extensions: 423349
Number of successful extensions: 1226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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