Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B12f
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0580 - 25184019-25184024,25184096-25184851,25184870-251849...    29   2.5  
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656...    29   2.5  
09_03_0191 - 13322141-13322458,13322767-13323033,13324836-133250...    28   3.3  
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365           28   4.3  
04_03_0734 + 19134129-19134464,19135864-19136789,19137148-191376...    27   7.5  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    27   10.0 

>11_06_0580 -
           25184019-25184024,25184096-25184851,25184870-25184927,
           25185306-25185376
          Length = 296

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -2

Query: 308 CLLASMLLNPYVFFKS----LMILMIWSSYLSKDSYPVLMVGML 189
           CL+   LL   VF K     ++ +++W +YLS DS  V ++G L
Sbjct: 40  CLVVVFLLFAAVFRKRCRSRVLSVLLWLAYLSADSVAVFVLGRL 83


>07_03_1410 +
           26363538-26363777,26365421-26365475,26365553-26365644,
           26365732-26365787,26366026-26366101,26366790-26366856,
           26367197-26367263,26368276-26368342,26368759-26368842,
           26369749-26369904,26370641-26370718,26371323-26371391,
           26371476-26371541,26371623-26371751,26372862-26372951,
           26373306-26373371,26373768-26373836,26373903-26374007,
           26374374-26374499,26374687-26374745,26374832-26374868,
           26375370-26375519
          Length = 667

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +1

Query: 214 YESFDKYEDQIISI---INDLKNTYGFNNIEASKQSLFDLPVRPGAIKHLVFAIGEPCIG 384
           Y+   K +D ++ +   I     ++   N +A K+++  LPV   A K++V   G P + 
Sbjct: 304 YDVVPKIKDMLLDLDFKIVIADESHFLKNAQA-KRTMHSLPVLQKA-KYVVLLSGTPALS 361

Query: 385 RCFLLDAIESAIYDVIFKNM 444
           R   L     A+Y  ++KN+
Sbjct: 362 RPIELFTQLQALYPTVYKNV 381


>09_03_0191 -
           13322141-13322458,13322767-13323033,13324836-13325048,
           13325153-13325349,13325432-13325636
          Length = 399

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 172 DKERYNNIPTIKTGYESFDKYEDQIISIINDLKNTYGFNNIEASKQSLFDLPVRPGAIKH 351
           DK+R   +  ++      D ++ ++   I + +  YGF  I+  K  L  +P   G I H
Sbjct: 93  DKKRAEALHALRPSVYKDDNHKPEMAIAITEFRALYGFAAIQELKDVLRTVPEVEGLIGH 152


>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
          Length = 144

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
 Frame = -2

Query: 239 SSYLSKDSYPVL----MVGMLL*RSLSSKCTWA 153
           SS+  ++++P++    +VG LL R +++ CTWA
Sbjct: 78  SSFPDEETFPIVICETLVGYLLYRMINAGCTWA 110


>04_03_0734 +
           19134129-19134464,19135864-19136789,19137148-19137615,
           19138096-19138159,19138885-19139022
          Length = 643

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 200 VGMLL*RSLSSKCTWAFFSLRSVSYKIGYGYLEVCPTRNTLT---SVMCLLFRLSIKCDT 30
           VG L     ++   WA   + +    +GYG+L +  TR       S+MCLL  +    +T
Sbjct: 66  VGFLAGTLSATLPAWAMLLVGAAQNFLGYGWLWLIVTRQLPALPLSMMCLLIFVGTNGET 125

Query: 29  SGTTISL 9
              T SL
Sbjct: 126 YFNTASL 132


>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 223 FDKYEDQIISIINDLKNTYGFNNIEASKQSLFDLPVRPGAIKHLVFAIGEPCIGRCFL 396
           FD Y D     +  LK  + ++ IEA     FDL V    +  ++F   + C     L
Sbjct: 606 FDLYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVE--KLNEIIFTYYKSCAASTLL 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,338
Number of Sequences: 37544
Number of extensions: 258798
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)