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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301A12f
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667...    40   0.001
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787     40   0.002
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691...    39   0.003
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474...    31   0.55 
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    31   0.73 
07_01_0229 - 1672126-1673976,1674427-1675404                           30   1.3  
03_06_0562 + 34732027-34733121                                         29   2.9  
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    28   5.1  
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    27   6.8  
03_03_0011 - 13716864-13716968,13717102-13717153,13717588-137177...    27   6.8  

>06_03_0679 -
           23464009-23464381,23464804-23464886,23466537-23466703,
           23466821-23467007,23467093-23467311
          Length = 342

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
 Frame = +2

Query: 179 MVIAKKIIVVNPFV-GVPKHNDFDI-VXXXXXXXXXXXFLAEAIYFSVDPYQ--RMK--- 337
           M +  + + V   V G+P  +DF++              L   +Y SVDPYQ  RMK   
Sbjct: 1   MEVESRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPYQLNRMKRRS 60

Query: 338 -----LGNVYPCDMIGGQIA-RVIESKNTEYPVGTLVMGHFGWRTHTITKP 472
                +  + P + I    A  V+ S   EY  G +V G  GW  +T+ +P
Sbjct: 61  ASHLAVDGIVPGERIDAYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRP 111


>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
          Length = 345

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
 Frame = +2

Query: 191 KKIIVVNPFVGVPKHNDFDIV------XXXXXXXXXXXFLAEAIYFSVDPYQRMKL---- 340
           KKI++ N   G PK +D ++V                  L + +Y S DPY R ++    
Sbjct: 6   KKIVLRNHVTGFPKESDMELVAATGAAPSRVPEGTDGAVLVKNLYLSCDPYMRGRMSSHD 65

Query: 341 GNVYPCDMIGGQI-----ARVIESKNTEYPVGTLVMGHFGWRTHTITK 469
           G+     ++G  I      +V++S +  +  G LV G  GW  +++ K
Sbjct: 66  GSYVDAFVVGEAITGYGVGKVVDSSHPGFKAGDLVWGMTGWEEYSLIK 113


>12_01_0762 +
           6915299-6915532,6916043-6916220,6916490-6916656,
           6916770-6916852,6916940-6917318
          Length = 346

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
 Frame = +2

Query: 191 KKIIVVNPFVGVPKHNDFDIVXXXXXXXXXXXFLAEAI-----YFSVDPYQRMKLGN--- 346
           K++I+     G+   +D ++V             +EA+     Y S DPY R ++     
Sbjct: 8   KRVILKRYVTGLLSEDDMEVVTTEVPPLAVVPAGSEAVVVKNLYVSCDPYMRNRMTRHEV 67

Query: 347 -VYPCDMIGGQIA------RVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENESSVN 493
             Y  D I G++       RVI S + ++  G LV G  GW  +T I  PE+   +N
Sbjct: 68  PSYVSDFIPGEVLANFGVMRVISSGHPDFKAGDLVWGITGWEEYTVINNPESLFRIN 124


>01_06_1628 +
           38745964-38746480,38747116-38747282,38747325-38747440,
           38747718-38748114
          Length = 398

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 377 IARVIESKNTEYPVGTLVMGHFGWRTHT-ITKPENESSVNKT 499
           +ARV++S +  +  G +V G  GW  ++ I +PE  S + ++
Sbjct: 120 VARVVDSTHPGFSAGDIVSGMTGWEEYSLIDRPEQLSKIQQS 161


>09_06_0048 +
           20477076-20478547,20478643-20478722,20478880-20478893,
           20480164-20481199,20481275-20481402,20481673-20481732,
           20481774-20481878,20481971-20482055,20482315-20482470,
           20482562-20482831,20482877-20483671,20483844-20483903,
           20484062-20485134
          Length = 1777

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 341 LVSFFDKDR--H*SILLLLETHFLVIRKVPLELYQNH 237
           L S F K R  H  +L LLE+HFL+    P+E+  NH
Sbjct: 729 LKSLFGKARVGHFEMLKLLESHFLMSEVSPVEIDDNH 765


>07_01_0229 - 1672126-1673976,1674427-1675404
          Length = 942

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 451 SPAKVTHNQCPNRILGIFTFNNSGNLSTNHITRIYI 344
           +P+    +  P + LG+F ++N+GNLS NH+  + I
Sbjct: 387 APSSNFSDALPAQYLGLFNYSNNGNLS-NHVFAVEI 421


>03_06_0562 + 34732027-34733121
          Length = 364

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 139 IQSHQITETFCRKYGYSEKNNSSKPICW 222
           +Q H+  E FC+  G+ E+   S P CW
Sbjct: 257 VQEHEGDEEFCKSLGFDER---SDPQCW 281


>02_04_0039 -
           19118632-19118820,19119018-19119395,19120151-19120345,
           19120425-19120502,19120567-19120752,19120828-19121058,
           19121137-19121490,19121588-19121785,19121869-19122039,
           19122156-19122263,19122362-19122580,19122665-19122871,
           19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 375 KLPELLKVKIPSILLGHWLWVTLAGEH-IQSLNQRMKALSTK 497
           K  E+LKV +  +L G   +V   G+H + S+ Q++ +L  K
Sbjct: 727 KQKEILKVVVTEVLGGGKFYVQTVGDHRVASIQQQLASLKLK 768


>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 253 NYIKIIMFGYTNKWVYYYYFFR 188
           +Y+ +I+FG    W+Y  YF R
Sbjct: 734 SYLPVILFGIYMSWIYLRYFQR 755


>03_03_0011 -
           13716864-13716968,13717102-13717153,13717588-13717719,
           13718289-13718491,13718584-13718695,13719308-13719474,
           13720059-13720119,13720527-13720645,13720911-13720943
          Length = 327

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 253 NYIKIIMFGYTNKWVYYYYF 194
           +YI II+FG    W+Y  YF
Sbjct: 186 SYIPIILFGIYLSWIYLRYF 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,024
Number of Sequences: 37544
Number of extensions: 206479
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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