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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0072.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     34   0.11 
01_02_0008 + 10134687-10135019                                         33   0.20 
07_03_1121 - 24130451-24130462,24130827-24131255                       29   2.4  
04_04_1437 + 33600282-33601562                                         29   2.4  
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347...    29   3.2  
11_06_0463 + 23879587-23879771,23879783-23881658                       29   4.2  
07_03_1199 + 24752111-24752332                                         29   4.2  
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819     29   4.2  
10_08_0606 - 19164215-19164619                                         28   5.6  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    28   5.6  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    28   5.6  
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165...    28   7.4  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    28   7.4  
02_03_0385 + 18396109-18396294,18396344-18396379                       27   9.7  
01_07_0121 - 41194049-41194558                                         27   9.7  

>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = -1

Query: 492  KLLHL--CWNRRWMLRFHHGYWNYILQCCYQRTWW-ILLW-----CLHQCYWNCQWPIHF 337
            K LH+  CW+ + + R      N  +Q   +R WW  L+W       H+ Y+NC++P  F
Sbjct: 848  KELHVRGCWSLQHLPRLSQEDLNQAVQVSGERAWWEKLIWDDDSSLTHRSYYNCKFPPPF 907


>01_02_0008 + 10134687-10135019
          Length = 110

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 563 FYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGCYASIMATGT 429
           + S+ RK   +   S+ + T+S  SSS+ AGT   C+ S++ T T
Sbjct: 6   YSSSERKKGPEKDTSIRSATVSFSSSSSSAGTRPSCWRSVVTTAT 50


>07_03_1121 - 24130451-24130462,24130827-24131255
          Length = 146

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 208 NCIHKCCYRPMYWILQGLCLHQCYW-NCRWMIHFHHDCRNCIHKC 77
           NC    C  P+ W+  G C H+C    C   + F  + R C H C
Sbjct: 29  NCC-AVCVEPLEWVAIGPCGHRCVCARCIVQVRFVSEDRRC-HVC 71


>04_04_1437 + 33600282-33601562
          Length = 426

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 328 IVMEVYWPLAVPVTLMQAPQKNPPRP 405
           +V E  WPLA P    Q P   PP+P
Sbjct: 1   MVREEAWPLAAPQQQQQQPSAPPPQP 26


>05_06_0286 +
           26932395-26933155,26934287-26934407,26934496-26934772,
           26934934-26935094
          Length = 439

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = -2

Query: 644 AGTVGCSSYRVVDDCTGSAFVTGILISFYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTV 465
           AG++  ++      C+ S  V G       +     + D  S  +V ++     + AG  
Sbjct: 49  AGSISAAAGAGDGACSSSVAVAGT-----GSISAAGAADGPSSSSVAVAGTGLISAAGAA 103

Query: 464 -GGCYASIMATGTISFSAATSGRGGFFCGACISVTGTAS 351
            G C +S+   GT S SAA +G G F      +  G+ S
Sbjct: 104 DGACSSSVAVAGTGSISAARAGDGPFSSSVAGAGAGSIS 142


>11_06_0463 + 23879587-23879771,23879783-23881658
          Length = 686

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 473 GTVGGCYASIMATGTISFSAATSGRGGFFCGACISVTGTASGQY 342
           G     +  ++A  +  F A   GRGG   G C+ V    +G++
Sbjct: 163 GETFAAHRCVLAARSPVFKAELCGRGGAAAGRCVDVDDMGAGEF 206


>07_03_1199 + 24752111-24752332
          Length = 73

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 298 VAALMDIAQAIVMEVYWPLAVPVTLMQAP 384
           V A+  +A    + + WP   PV +M+AP
Sbjct: 8   VGAIASVAVGAAVSLLWPAVAPVVMMKAP 36


>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
          Length = 451

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 11  PAVPVTLMQAQTLQD-PVHPAVAALMDTVPTVVME--VYHPPA 130
           P+     +   TL+D P+ P+ AA  DT+P  +     +HPPA
Sbjct: 22  PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64


>10_08_0606 - 19164215-19164619
          Length = 134

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -2

Query: 578 GILISFYSTTRKPSSDDAASLLAVTLS*RSSSTCAGTVGGC-YA-SIMATGTISFSAATS 405
           G L++ Y+   +P+S      L    + RSSS    TV G  Y+ S  + G  +  A  +
Sbjct: 31  GNLVALYAGPYRPASSSMGCYLVYDAAARSSSPPLSTVPGVPYSDSHSSPGRATVIAPAA 90

Query: 404 GRGGFFCGACISVTGTA 354
             GGF  G  +    TA
Sbjct: 91  TGGGFMDGHSVLPPSTA 107


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 444 HGYWNYILQCCYQRTWWILL 385
           HG W Y+++  Y+RT W+ L
Sbjct: 586 HGEWLYLIRIWYKRTTWMYL 605


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -3

Query: 229 HFHHDCWNC--IHKCCYRPMYWILQGL 155
           HF+ +CWNC      CY    W LQ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795


>12_01_0220 -
           1657554-1657620,1657943-1658109,1658110-1658267,
           1658362-1658447,1658559-1658808,1659194-1660320,
           1662207-1662351,1663555-1663696,1663775-1663828,
           1663914-1663985,1664710-1664778,1664885-1664926,
           1665024-1665092,1665257-1665394,1665518-1665628,
           1665704-1665836,1666834-1666889,1667191-1667901
          Length = 1198

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 5   HPPAVPVTLMQAQTLQDPVHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTL 163
           H P  P+ L+  + ++ P+   + +L       V+++YH     V L  A TL
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMTL 633


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 59  VHPAVAALMDTVPTVVMEVYHPPAVPVTLMQAQTLQDPVHRAVAALMD 202
           V  A A L +   T+++ ++ PPA+P  L  A  L   +  A AAL D
Sbjct: 43  VDDAAALLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAADAALRD 90


>02_03_0385 + 18396109-18396294,18396344-18396379
          Length = 73

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 301 AALMDIAQAIVMEVYWPLAVPVTL 372
           + LM +A A+V+ VY PL++PV L
Sbjct: 9   SVLMHVAAALVVLVYIPLSMPVKL 32


>01_07_0121 - 41194049-41194558
          Length = 169

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 430 VPVAMMEA*HPPTVPAQVEELLQLSVTAKSDAASSEDG 543
           +P A + A  PP VP Q++E    ++TA + AA+   G
Sbjct: 19  LPTAAVAA--PPDVPQQLQEQYYAAITAAAAAAAQHGG 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,400
Number of Sequences: 37544
Number of extensions: 372476
Number of successful extensions: 1390
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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