SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0039
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    67   1e-11
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    59   3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    40   0.002
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887...    29   2.4  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    29   4.1  
11_01_0433 - 3323372-3324616,3324708-3324905                           28   5.4  
06_03_0630 + 22926652-22928133                                         28   7.2  
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834...    28   7.2  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    28   7.2  
02_05_0533 - 29818276-29818866                                         27   9.5  
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533...    27   9.5  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = +1

Query: 19  SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT-SDKGVVEVTNCFCVPHKEHADQVEAE 195
           S +V  VV+F I D+Y RR   + RVIGTLLG+    G V V N + VPH E  DQV  +
Sbjct: 18  SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77

Query: 196 LNYAMDVYELNRRVNSSESMLVG 264
           + Y  ++Y  + +VN  E ++VG
Sbjct: 78  IEYHHNMYASHHKVNPKE-VIVG 99



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 30/90 (33%), Positives = 50/90 (55%)
 Frame = +3

Query: 255 VGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQG 434
           VGW++TG  V+  S++IH++YSRE + P+H+T+DT    G   ++AY+   L + +    
Sbjct: 98  VGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLA 157

Query: 435 CMFTPVDVTLTCYEPEIVGLQVCQKLCLVE 524
             F  + + L   E   VG  +  K  +VE
Sbjct: 158 AQFQEIPLDLRMLEAGKVGFDIL-KSTIVE 186


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
 Frame = +1

Query: 22  VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 189
           V VHP+VL  IVD Y R   D+  RV+G LLGTS +G V+VTN + VP +E         
Sbjct: 17  VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76

Query: 190 AELNYAMDVYELNRRVNS 243
            + NY   ++ + +R+N+
Sbjct: 77  LDHNYHESMFSMFKRINA 94


>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 94  VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVN 240
           V G LLG     V+EVTNCF  P +E  ++ +A+  NY +++    R VN
Sbjct: 57  VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVN 106


>07_03_0737 +
           21087442-21088282,21088402-21088524,21088623-21088744,
           21088784-21089027,21089430-21089670,21089746-21089899,
           21090179-21090214,21090215-21090520
          Length = 688

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = +3

Query: 156 RATQRTCRSSRSGT*LRDGCLRAEQKSQFL*KYVGWWATGNEV-----TNHSSVIHEYYS 320
           R  +R C SS+  T  +DGC+      +FL  +VG  +  +E+     +N ++V   +++
Sbjct: 97  RVARRDCPSSKDATTYQDGCIVRFSDQRFL-DFVGVNSPVSELYSDADSNITAVPVAWFN 155

Query: 321 RECREPVHVTLDTSLAGG 374
                 ++ T+DT++A G
Sbjct: 156 AAVVALMNATVDTAVAAG 173


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 433 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 335
           P  PF +P  +  +AR P  P  +E+S    TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631


>11_01_0433 - 3323372-3324616,3324708-3324905
          Length = 480

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 237 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 142
           D++V L+ IH+ I F F    ++FVW  +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351


>06_03_0630 + 22926652-22928133
          Length = 493

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
 Frame = +1

Query: 85  SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESM--L 258
           +HR++   L +     V+ T    VPH +  D       +A D Y    R   +ES+  +
Sbjct: 51  AHRLMFPSLPSPAGEDVDDTGVAYVPHSDGYDDGYKPGVHARDDYMARTRAAGTESLSAI 110

Query: 259 VGGRLAMK*PTTPLLYTSII-----PVNAVSLSMLLWTLRWLEVEWVYVHMFVYHWE 414
           V    A   P T ++YT ++        A+ +   ++ ++      VY H F  H E
Sbjct: 111 VAALAARGRPVTCIVYTFLVVWAPAVARALGIPSAIYWIQPAAAFAVYYHYFHGHGE 167


>05_05_0039 -
           21782093-21782320,21782383-21782754,21783031-21783496,
           21784896-21784993,21785179-21785362,21785462-21785574,
           21785942-21786127,21786191-21786364
          Length = 606

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 237 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 142
           D++V L+ IH+ I F F    ++FVW  +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 113 ARATKEWWK*PTASACHTKN-MPIKSK 190
           A  +KEWW     +ACH  N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534


>02_05_0533 - 29818276-29818866
          Length = 196

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 196 LNYAMDVYELNRRVNSSESMLVGGR-LAMK*PTTPLLYTSIIPVNAVSLS 342
           L++  DV+ L+RRV+     L   R + ++ P  P +   ++P  A S S
Sbjct: 34  LSHVADVHTLHRRVDPEAGRLQAARSITVRSPPLPFILRRLLPAAASSPS 83


>01_06_1089 -
           34451982-34452670,34452755-34452814,34453287-34453352,
           34454055-34454253,34454470-34454719,34454830-34454898,
           34455733-34455804,34456027-34456168,34456544-34457064,
           34457166-34457739,34459164-34459269
          Length = 915

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 310 SIIPVNAVSLSMLLWTLRWLEVEWVYVHMFVYHWECQMESKVACSL 447
           S  P   VSL  ++W + ++E  W Y H +      + +S+   SL
Sbjct: 627 SQFPYQFVSLFSVIWLISYIENVWTYGHRYRELRSSKQDSRYDSSL 672


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,228
Number of Sequences: 37544
Number of extensions: 398763
Number of successful extensions: 1047
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -