Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0031
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 28 3.0
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 28 3.0
05_03_0618 - 16262826-16263097,16263111-16263183 27 4.0
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 5.3
09_04_0269 + 16265191-16265472,16265574-16266149 27 5.3
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 7.0
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 7.0
05_05_0064 + 22063951-22064462,22066344-22066566 26 9.2
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 26 9.2
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +3
Query: 144 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 251
R +G+K RCC S R+ + R + C+ CCC
Sbjct: 17 RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 192 TSILRKFSGRQHCVTVDCCCHVAPTP*GDAKHHP 293
T L + G C + C C V P P ++HHP
Sbjct: 24 TPSLGRVIGGSKCKCLMCVCDVDPHPLPPSRHHP 57
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 15 RIARREQKLKEHGASSCISGKRGRRC 92
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 132 GSRARFQLSGNSGRKHSRCCTS 197
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 127 MESTDPQCHILQHRRPRLPL 68
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 21 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 185
A++ + E S G G + W+W D SGS + FQ S SR
Sbjct: 87 AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 21 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 134
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
>05_05_0064 + 22063951-22064462,22066344-22066566
Length = 244
Score = 26.2 bits (55), Expect = 9.2
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = +3
Query: 45 EHGASSCISG--KRGRRCCNIWHWG----SVDSISGSRARFQLSGNSGRKHSRCCTSILR 206
E G + I G ++ RCC I H G + +S +G G+ H +C +
Sbjct: 107 EAGLAEVIKGSPEKAERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWF- 165
Query: 207 KFSGRQHC-VTVDCCCHV 257
K G + C + C+V
Sbjct: 166 KIRGNKICEICSSTACNV 183
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 111 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSG 218
GS DS+ G + R + N K C T I LRK SG
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSG 704
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,174,473
Number of Sequences: 37544
Number of extensions: 189298
Number of successful extensions: 425
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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