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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0029
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   129   7e-31
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   2e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   6e-09
04_04_0303 + 24269467-24270741                                         31   0.26 
02_05_0029 - 25194827-25195095,25195129-25197970                       29   1.4  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   5.6  
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35...    27   7.5  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    27   7.5  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   7.5  
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888...    27   7.5  
06_01_0462 - 3285667-3288123                                           26   9.9  
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205...    26   9.9  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  129 bits (312), Expect = 7e-31
 Identities = 56/79 (70%), Positives = 64/79 (81%)
 Frame = +3

Query: 27  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 206
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 207 QPTGGRARLTEGCSFRENN 263
           QPTGG+ARLTEGCSFR  +
Sbjct: 67  QPTGGKARLTEGCSFRRKS 85


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +3

Query: 27  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 164
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 27  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 143
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 24  AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 203
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 204 CQPTGGRA 227
           C  TG  A
Sbjct: 198 CSATGAGA 205


>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 201  LCQPTGGRARLTEGCSFRENNINI*VLDRALFNFKIFFPIV*WSDI 338
            +C+P G R  ++     +E N    VLDRA+++ K    +V   DI
Sbjct: 958  MCKPKGARELVSWVLHMKEKNCEAEVLDRAMYDKKFEMQMVQMIDI 1003


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 132 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 224
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>12_01_0045 -
           354825-355504,355602-355776,355847-355927,357266-357498,
           357921-358104
          Length = 450

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 366 RWIHCSELEKYHSI 325
           RWIH SELE+ H+I
Sbjct: 416 RWIHHSELEEVHTI 429


>09_04_0594 - 18831011-18831360,18831562-18832111,18832364-18833406,
            18833496-18833760,18835194-18835340,18835431-18835511,
            18835626-18835804,18835935-18836093,18836269-18836398,
            18836935-18837094,18837337-18837419,18837865-18837915,
            18838035-18838151,18838273-18838359
          Length = 1133

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 1    RHE*PCRSQLICCILPLRRRGGNISLSG*CHILTLISWMLSALAVTRLQQFL 156
            R + P R ++   ++  RRRGG +       +L  I W  S  +  +L + L
Sbjct: 1076 RSQQPAREEVSSTLINTRRRGGGLIFISLMVLLVAIMWTFSNGSAVKLSKGL 1127


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 96  PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 221
           PN     + C GC  +  ++      V CA CST+   P  G
Sbjct: 18  PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 162 AQRVVVCAGCSTILCQPTGGRARLTEGCS 248
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


>04_02_0031 +
           8874025-8874180,8882152-8882550,8882651-8882987,
           8883234-8884060
          Length = 572

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 9   VTMPLAIDLLHPSPASERRKHK 74
           +T P   DL + +PA++RR+HK
Sbjct: 98  LTQPFPADLPNNAPAAQRREHK 119


>06_01_0462 - 3285667-3288123
          Length = 818

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 279 LDRALFNFKIFFPIV*WSDIFQV 347
           LDR LF++   FP++ WS  + +
Sbjct: 614 LDRLLFDYHNLFPVLKWSQRYNI 636


>01_05_0607 +
           23619271-23619426,23619479-23619552,23619917-23620594,
           23620711-23620815,23620877-23621003,23621613-23621773,
           23621858-23622028,23622195-23622324,23622532-23622747,
           23626821-23627348
          Length = 781

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 158 TKNCCNLVTARALNIHEIRVRMWH*PLKLMFPPLRRRGRMQQINCERHGYS 6
           T +CC +  A  L+  E RV +   PL+++   L  RG + Q+N    G S
Sbjct: 679 TAHCCFICRAGVLSAGECRVAVGVDPLEVL-DRLPDRGAVHQMNRREAGNS 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,080,550
Number of Sequences: 37544
Number of extensions: 202453
Number of successful extensions: 474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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