Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0006
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    30   1.4  
10_06_0172 + 11473892-11474896                                         29   4.3  
06_03_0089 - 16475677-16476309                                         29   4.3  
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675...    29   4.3  
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028...    28   7.5  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   7.5  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     27   9.9  
10_01_0141 - 1686827-1687063,1687160-1687315,1688046-1688974,168...    27   9.9  

>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 308 PNERRTLLRIPEECSGGCSSQRSMEHPRR 394
           P+E RT  R P E SGG  S+RS E P +
Sbjct: 76  PSEGRTEDREPGEVSGGSGSERSGERPMK 104


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 321 GRYCGYPRSVRVDARLRDRWNILG 392
           G Y GYP +VRVDA     +N++G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


>06_03_0089 - 16475677-16476309
          Length = 210

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 532 HYSRSDTGRCYVQNIPTYCLAHLWRCPVLNRSL 434
           H SR    RC V  +P YC   L   P+L R L
Sbjct: 113 HSSRPAAQRCQVPAVPYYCATELPCPPLLRRRL 145


>03_06_0222 +
           32466379-32466741,32466849-32466948,32467443-32467547,
           32467627-32467789,32467995-32468115,32468625-32468705,
           32468813-32468911,32468955-32468986,32468987-32469137,
           32469477-32469563,32470290-32470409,32470514-32470645,
           32470743-32470840,32470919-32471042,32471126-32471233,
           32471822-32471957,32472751-32472861,32472963-32473026,
           32473133-32473205,32473762-32473938,32474012-32474122,
           32474189-32474449,32474811-32474981,32475073-32475228,
           32475590-32475823,32475936-32476103,32476316-32476425,
           32476513-32477041
          Length = 1394

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 397 FCSHKISTSPTHRGCDLERDNATNEPSSKSV-YFGRNTVQCLISNNGLVSPELLCYY 564
           F  H+    P    C L   +  NEP SK V  F  N +  L+ N G++ P++L +Y
Sbjct: 178 FSEHETFDHPV--ACLLVVSSKDNEPISKFVDLFNTNQLPSLL-NEGIMDPQILKHY 231


>07_03_0740 -
           21102015-21102287,21102402-21102555,21102647-21102884,
           21103008-21103218,21103303-21103442,21103537-21103665,
           21104120-21104960
          Length = 661

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 355 WMLVSEIDGTS*AFFCSHKISTSPTHRGCDLERDNATNEPS 477
           W    +I G + +  CS +I T P   G  + R  AT+ PS
Sbjct: 224 WSYKDDIGGRTLSVRCSFRIETKPFLNGTTMVRLPATSAPS 264


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 86  NFDHDKHIFTGHGGKQR--TKKEASEHTNH 169
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 164 WCVQTLLSWCAAYHRG 117
           W ++ L  WCAA HRG
Sbjct: 192 WSLEQLNRWCAALHRG 207


>10_01_0141 -
           1686827-1687063,1687160-1687315,1688046-1688974,
           1689595-1689640,1689914-1689932,1690751-1690962,
           1691063-1691218,1692240-1693184,1693448-1693597
          Length = 949

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 554 SSSGLTSPLFEIRHWTVLR 498
           +SSG+TS  F I+HW+ L+
Sbjct: 916 ASSGITSVQFHIKHWSQLK 934


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,845,183
Number of Sequences: 37544
Number of extensions: 345495
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)