Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0029 + 7196149-7196213,7196303-7196424,7197616-7197822,719...    28   1.5  
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498...    27   2.6  
01_06_1816 + 40086972-40087820,40088324-40088459,40088544-400886...    27   4.5  

>10_03_0029 +
           7196149-7196213,7196303-7196424,7197616-7197822,
           7197904-7198091,7198493-7198628,7198973-7199069,
           7199200-7199300,7199644-7199807,7200029-7200217,
           7200590-7200711,7200961-7200979
          Length = 469

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 292 GSTVLLPQMSYVSVRSLGQP 233
           GS +L+P + Y+ VRSLG P
Sbjct: 195 GSAMLMPALKYLVVRSLGAP 214


>01_06_1252 -
           35748000-35748173,35748243-35748375,35749771-35749847,
           35750465-35750509,35750584-35750679,35751125-35751130,
           35751259-35751388,35751510-35751706
          Length = 285

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 291 VAQYCCRKCHTYQLEVWDSRYIMRLRPHV 205
           VAQ  C K    + ++WD+  IM L P +
Sbjct: 178 VAQIYCNKYEVSREQIWDTPQIMELSPWI 206


>01_06_1816 +
           40086972-40087820,40088324-40088459,40088544-40088640,
           40088742-40088842,40089149-40089312,40089407-40089595,
           40089904-40090025,40090200-40090242
          Length = 566

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 292 GSTVLLPQMSYVSVRSLGQP 233
           GS +++P + Y+ VRSLG P
Sbjct: 284 GSPMMIPALRYLVVRSLGAP 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,228
Number of Sequences: 37544
Number of extensions: 137543
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)