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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365...   132   3e-31
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...   131   4e-31
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    33   0.26 
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861     29   2.4  
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    29   4.2  
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    28   7.4  
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692...    28   7.4  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    28   7.4  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   9.7  

>02_03_0270 +
           17135464-17135467,17135583-17135655,17136253-17136583,
           17136916-17136969,17137219-17137394,17137607-17137685
          Length = 238

 Score =  132 bits (318), Expect = 3e-31
 Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 177
           KRRATGGK+   RKKRKYELGR  ANT+L   + +  VR RGGN K+RALRLDTGN+SWG
Sbjct: 10  KRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWG 69

Query: 178 SECSTRKTRIIDVVYNASNNELVRTKPL 261
           SE  TRKTRI+DVVYNASNNELVRT+ L
Sbjct: 70  SEAVTRKTRILDVVYNASNNELVRTQTL 97



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 25/111 (22%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA-------------------------K 356
           +TLVK+AIV VDA PF+QWY +HY + +GRKK A                         K
Sbjct: 95  QTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLK 154

Query: 357 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 509
             +AE      K+S    RK   RQ+   ++  +EEQF +GRLLAC++SRP
Sbjct: 155 GQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRP 205



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 205 PGQCGRADGYILEGKELEFYMKKLQRKKGK 234


>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score =  131 bits (317), Expect = 4e-31
 Identities = 64/88 (72%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 177
           KRRATGGK+   RKKRKYELGR  ANT+L   + +  VR RGGN K+RALRLDTGN+SWG
Sbjct: 10  KRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWG 69

Query: 178 SECSTRKTRIIDVVYNASNNELVRTKPL 261
           SE  TRKTRI+DVVYNASNNELVRT+ L
Sbjct: 70  SEAVTRKTRILDVVYNASNNELVRTQTL 97



 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKT 407
           +TLVK+AIV VDA PF+QWY +HY + +GRKK         A+  E E A    K+S   
Sbjct: 95  QTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHV 154

Query: 408 ARKYLARQRLAKVEGALEEQFHTGRLLACVASRP 509
            RK   RQ+   ++  +EEQF +GRLLAC++SRP
Sbjct: 155 VRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRP 188



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/30 (76%), Positives = 28/30 (93%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 188 PGQCGRADGYILEGKELEFYMKKLQRKKGK 217


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
 Frame = +1

Query: 46  RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 180
           R+ +LG P+ +T+  P+R+ S+++R        K+ A   DTG  F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320


>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 150
           KRR  GG+RA  R+K + E GR  A     R G  R    R RGG  + R  R
Sbjct: 81  KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 135
           KRR  GG+RA  R+K + E GR  A            R RGG  +
Sbjct: 45  KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 135
           +RR  GG+RA  R+K + E GR  A            R RGG  +
Sbjct: 9   RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 83  GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 241
           G  +    P + VV   + + C+W  + SLG R  Q++K   + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 345 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 476
           KG+KL + E   + + R++  A     R  LA   GAL +  H+
Sbjct: 4   KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47


>03_02_0259 -
           6920472-6920579,6920744-6921022,6921115-6921390,
           6921473-6921691,6921795-6921963,6922248-6922422,
           6922490-6922601,6923343-6923573
          Length = 522

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 319 CDSYHCLNGVASTTTIAFLTRVLYAPIHC*MHYTQHQ*YGFCELNIPIP 173
           C  Y  L GV S   IA L+ +   P+    H+     YG   L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 100 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKPLSR 267
           +H + + GG T  R +R      +    C    +++ ++V++ + NELV T   S+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQ 431


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 319 CDSYHCLNGVASTTTIAFLTRVLYAPIHC*MHYTQHQ*YGFCELNIPIP 173
           C  Y  L GV S   IA L+ +   P+    H+     YG   L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,169
Number of Sequences: 37544
Number of extensions: 324294
Number of successful extensions: 1031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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