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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30018
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.3  
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794...    29   3.9  
05_03_0258 - 11153709-11156090                                         29   3.9  
08_01_0038 - 282431-283954                                             28   5.2  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    28   5.2  
11_05_0017 - 18416977-18417936                                         28   6.9  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    28   6.9  
11_01_0529 - 4158926-4158993,4160010-4160076                           28   6.9  
09_02_0442 - 9438617-9439381,9439463-9439693                           27   9.1  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   9.1  
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     27   9.1  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 135 ITIHWPSFYNVV-TGKTLALPNLIALQH 215
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0227 +
           21475954-21476771,21477215-21479144,21479292-21479426,
           21480287-21480392,21480560-21480576
          Length = 1001

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 415 TEIGLSVVPVWNK-SPLLKNVDSNVKGRKTVYRAMAHYVNHHPNQ 546
           T++GL  +P+ N+   +L   D+  +  +    A  H VN HPN+
Sbjct: 862 TDVGLGHLPLLNRVEVILHCCDATTRQVEEAEAAWRHMVNSHPNR 906


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 321 NINAYNLPFAIQAAQLLGRAIGGASSLLRQLAKGGCAARRLSWVT 187
           N+N YNL F +   +    A+     +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAM---LEMLEEMSRSGCTPNRVTWNT 431


>08_01_0038 - 282431-283954
          Length = 507

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 267 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 443
           FP++A+ P  R   C + Y VK R   LL+QLI     + R + L     + D ++   S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286

Query: 444 LEQE 455
           ++QE
Sbjct: 287 IQQE 290


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 282 AQLLGRAIGGASSLLRQLAKGGCAARRL 199
           A L G A G    L RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>11_05_0017 - 18416977-18417936
          Length = 319

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 538 GDGSRSGPSPDRRFFAL*RWSP 473
           G   R GP+  RRFF   RW+P
Sbjct: 275 GVARRPGPTQGRRFFGCGRWTP 296


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -3

Query: 320 ILTLTICHSPFRLRNCWEGRSVGPLRYYAS-------WRKGDVLQGD*VG 192
           +L L+  H P  L+ C+   S+ P  YY         W+   +LQGD +G
Sbjct: 386 VLELSYKHMPIDLKQCFVALSLYPKYYYLDENMVVWLWKLLGLLQGDEIG 435


>11_01_0529 - 4158926-4158993,4160010-4160076
          Length = 44

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 146 LAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSE--EAPP 259
           +A++LQRR   + G  + + LAA  P  +W N +  E PP
Sbjct: 1   MALLLQRRHGADAGGDRHHHLAAEWPKVTWHNLDFLEIPP 40


>09_02_0442 - 9438617-9439381,9439463-9439693
          Length = 331

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 291 IQAAQLLGRAIGGASSLLRQLAKGGCAARRLSWVTPGFSQSR 166
           + AA LLG A  G + L     KG C A  +  V  G  +SR
Sbjct: 14  VAAAVLLGLAGAGHAQLQNGFYKGKCGANDVEAVVQGIVRSR 55


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 147 WPSFYNVV-TGKTLALPNLIALQH 215
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 227 ASWRNSEEAPPIALPNSCAA*MANGKL 307
           ++W N+++APP+ LP   AA  +N  L
Sbjct: 45  SAWSNADDAPPLPLPLQDAAVDSNDSL 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,670
Number of Sequences: 37544
Number of extensions: 364127
Number of successful extensions: 914
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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