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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00019
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     87   7e-18
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    86   9e-18
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     86   1e-17
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    30   0.80 
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    29   1.4  
12_01_0899 - 8689125-8689383,8689540-8689826                           29   1.8  
09_04_0201 + 15543318-15543488,15543956-15544069                       29   1.8  
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220...    29   1.8  
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095...    29   1.8  
04_01_0053 + 551027-553024                                             28   2.4  
04_04_1576 - 34551095-34552645                                         27   4.3  
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782...    26   9.9  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    26   9.9  
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062...    26   9.9  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 86.6 bits (205), Expect = 7e-18
 Identities = 41/84 (48%), Positives = 53/84 (63%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ENT+L+++EG   + +  +Y GK   YVY+AK ++   GG 
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
               T  R IWGKVTRPHGNSG V
Sbjct: 67  ----TNYRCIWGKVTRPHGNSGVV 86



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +3

Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
           C  G+   P       RAKFKSNLP  +MG ++RV +YPS I
Sbjct: 71  CIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 86.2 bits (204), Expect = 9e-18
 Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+AK ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSVEPS--SSLTSLPRLW 294
               + +R IWGKVTRPHGNSG V     S+L      W
Sbjct: 64  --NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMFW 100


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 40/84 (47%), Positives = 53/84 (63%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+AK ++      
Sbjct: 10  RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
               + +R IWGKVTRPHGNSG V
Sbjct: 64  --NDSTIRCIWGKVTRPHGNSGVV 85



 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
           C  G+   P       RAKF+SNLP  +MG ++RV +YPS I
Sbjct: 70  CIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 305  YSVSHSLGREVRLELGSTLPELPCGRVTLPQIARSLVFLPRGPP 174
            + + H + RE  L   + LP LP G   LP  A     LP GPP
Sbjct: 1104 HDLQHEIDREQALADQNELPPLPDGPPPLPLDAPPPPPLPEGPP 1147


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 326 GRIQHHSYSVSHSLGREVRLE 264
           GR+ HHS+ VS  L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 251 LPELPCGRVTLPQIARSLVFLPRGPP 174
           LPE PC R+ LP+    +  LP  PP
Sbjct: 35  LPEPPCARLLLPEPPWGMAALPPEPP 60


>09_04_0201 + 15543318-15543488,15543956-15544069
          Length = 94

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 233 GRVTLPQIARSLVFLPRGPPGIGVLFL 153
           GR+  PQ + S V  PRG PG+ VL L
Sbjct: 6   GRLPRPQGSSSAVPRPRGLPGVSVLLL 32


>07_01_0308 +
           2203597-2203774,2203886-2204066,2204141-2204282,
           2204371-2204440,2204546-2204715
          Length = 246

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 198 GFFATGTSGNWCPLLSSVHIDAMLA 124
           GFFA    G+WC LL+ ++I  + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195


>04_03_0827 -
           20108937-20109046,20109146-20109234,20109400-20109548,
           20109801-20109942,20110530-20110645,20111141-20111458
          Length = 307

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 191 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 39
           +P+ PPG     LA +   Q L        R+FA  T   A  SC +RR R
Sbjct: 87  VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137


>04_01_0053 + 551027-553024
          Length = 665

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -1

Query: 240 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 151
           A++AGHL      P+   +GFFA+G+ G    LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265


>04_04_1576 - 34551095-34552645
          Length = 516

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 151 LCTHRRNACQHKRLHHYGLLLL 86
           LC H   AC   RLH +GL LL
Sbjct: 77  LCNHLLIACFKSRLHRHGLRLL 98


>11_02_0056 +
           7828453-7828717,7829425-7829427,7829658-7829912,
           7829997-7830124,7831063-7831207,7832178-7832275,
           7833253-7833395,7835119-7835239,7835492-7835584,
           7835712-7835828
          Length = 455

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 82  VEGAKDRNDAVFYAGKHC-VYVYRAKKRTPIPGGPRGKKTKLR 207
           ++  ++    V  A +H  + V + K +TP+P    G  +KLR
Sbjct: 222 LQDGREFEGTVLNADRHSDIAVVKIKSKTPLPSANLGSSSKLR 264


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -3

Query: 298 CPIAWAGR---LDLNLARHCQSCHVGGSPC 218
           CP+    R   +  N+ RH Q  H  GSPC
Sbjct: 318 CPMEGCNRKFTIKGNIQRHVQEMHKDGSPC 347


>02_05_0862 -
           32305562-32305654,32305935-32306033,32306178-32306259,
           32307407-32307764,32308745-32309521,32309612-32309716,
           32309803-32309911,32311016-32311024
          Length = 543

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 181 PRGKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLPRLWD 297
           P+G  ++   + G   R +G SG V P ++   LP  W+
Sbjct: 158 PKGWSSERVPLGGGTNRRYGGSGVVLPFNNGRKLPSKWE 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,098
Number of Sequences: 37544
Number of extensions: 263109
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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