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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00015
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667...    73   2e-13
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480...    68   5e-12
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164...    46   2e-05
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653...    29   2.2  
04_01_0229 - 2897484-2900402                                           29   2.2  
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216...    28   5.1  
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234...    27   8.9  
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982...    27   8.9  
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600...    27   8.9  

>06_02_0132 -
           12166009-12166089,12166197-12166321,12166489-12166710,
           12168194-12168260,12168424-12168741
          Length = 270

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 28/63 (44%), Positives = 44/63 (69%)
 Frame = +1

Query: 1   DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
           DK   M+G++ P++E  +Y TP E  PSG+ ARGSYS  + F DDD+  +L+  ++F+I+
Sbjct: 204 DKTKEMLGTFSPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIR 263

Query: 181 KDW 189
           +DW
Sbjct: 264 RDW 266


>02_05_0539 +
           29846439-29846711,29846819-29846885,29847832-29848050,
           29848200-29848324,29848423-29848503
          Length = 254

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 27/63 (42%), Positives = 42/63 (66%)
 Frame = +1

Query: 1   DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
           D    M+G++ P+ E  +Y TP E  PSGM ARGSYS  + F DDD+  +L+  ++F+I+
Sbjct: 188 DSHKEMLGTFSPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDRKCYLEINYTFDIR 247

Query: 181 KDW 189
           ++W
Sbjct: 248 REW 250


>01_06_1776 -
           39815634-39815714,39815761-39815927,39816278-39816496,
           39816614-39816680,39816771-39816932
          Length = 231

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
 Frame = +1

Query: 16  MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYS--------------VNSLFTDDDKNVHL 153
           M+G++ P++E  +Y    E  P+GM ARGSYS              V   F DDD   +L
Sbjct: 156 MLGTFSPQLEPYTYEGEEETTPAGMFARGSYSAKLKVFKLIKFSSDVLIEFVDDDGKCYL 215

Query: 154 QWEWSFEIKKDW 189
           +  + FEI+K+W
Sbjct: 216 EMSYYFEIRKEW 227


>07_01_0817 +
           6533316-6533849,6533996-6534064,6534528-6534767,
           6537747-6537965,6538041-6538133,6538231-6538332,
           6538415-6538858
          Length = 566

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 123 LHRRRQERPPPVGVELRNQEGLERLSLALHSKIDWVG 233
           L + RQ+ P   GV L   EGL+  +L L  +ID +G
Sbjct: 250 LTQSRQQHPAAEGVSLGTTEGLQAKTLRLLLEIDQIG 286


>04_01_0229 - 2897484-2900402
          Length = 972

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 135 RQERPPPVGVELRNQEGLERLSLALHSKIDWVGRGCLVANRCSRLKQIKIL 287
           +QE PP V V +R +   E L L  HS+ + V +  LV +  ++ K I  L
Sbjct: 192 KQEEPPEVPVIIRYRRAPEDLLLYAHSQFE-VCKSALVDSSSAKAKNISYL 241


>02_01_0321 -
           2162015-2162134,2162763-2162846,2162931-2163011,
           2163690-2163867,2163946-2164089,2164194-2164240,
           2164520-2164576,2165286-2165408,2165496-2165618,
           2165959-2166072,2166169-2166176,2166272-2166458,
           2174597-2174763,2174924-2175008,2176632-2176820,
           2177727-2177918,2178434-2178634
          Length = 699

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 84  RDDGARLVQRQQPLHRRRQERPPPVGVEL-RNQEGLERLSLA 206
           R+    L++ QQ  H+RR+ R PPV  +L   +E  E +++A
Sbjct: 57  RESADLLMRMQQNKHQRRRYRIPPVNNKLGEKEEVTEEIAMA 98


>11_01_0315 -
           2347254-2347345,2347485-2347895,2348182-2349633,
           2349688-2350045,2350818-2351177,2351321-2351419,
           2351856-2351948,2352078-2352215,2352389-2352476,
           2352682-2352770,2353113-2353178,2353370-2353481,
           2354702-2354901
          Length = 1185

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 60  NAPRGCA-VRDDGARLVQRQQPLHRRRQERPPPVGVELRNQEGLERLSLALH 212
           ++PRG   +   G R+   + P HR  +  PPP GV   +      +   LH
Sbjct: 448 SSPRGRRRIEGSGRRIEPPRPPSHRGFRPSPPPPGVAYNSPPLARHIGRRLH 499


>10_06_0029 +
           9822216-9823124,9825210-9825329,9826188-9826304,
           9826387-9826476,9826706-9826756
          Length = 428

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
 Frame = +3

Query: 45  DSVLHNAPRGCAVRDDGARLVQRQQPLHRRR----QERPPPVGVELRNQEGLERLSLALH 212
           +S ++  PR  A R   A    R +P  RRR     ERP P             L  +LH
Sbjct: 95  ESFVYETPRAAAPRRAPAAAAARPRPTTRRRGEAENERPSPPPASKATDALARSLDCSLH 154

Query: 213 SK 218
            K
Sbjct: 155 RK 156


>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
            30560455-30560718,30560803-30560940,30561264-30561315,
            30561525-30561604,30561929-30561988,30562084-30562164,
            30562299-30562376,30563548-30563676,30563896-30564039,
            30564145-30564290,30564402-30564558,30564657-30564715,
            30564800-30564959,30565054-30565203,30565309-30565445,
            30565531-30565677,30565995-30566052,30566417-30566518,
            30566590-30566627,30566846-30566972,30567053-30567223,
            30567313-30567444,30567575-30567681,30567815-30567875,
            30567970-30568147,30568245-30568450,30568781-30568879,
            30569021-30569236,30569333-30569472,30569559-30569660,
            30569747-30569861,30570129-30570194,30570323-30570480,
            30570594-30570690,30570931-30571137,30571435-30571505,
            30571648-30571747,30571836-30571892,30571969-30572025,
            30572108-30572188,30572319-30572401,30572504-30572651
          Length = 1722

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 604  FFFLNHKPHKAACHLTEPLCFNLSIVYIY 518
            F  L+ K HK    +T+ LC  LSI  IY
Sbjct: 1599 FLVLHQKTHKTLEEITDELCPVLSITQIY 1627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,297,975
Number of Sequences: 37544
Number of extensions: 314746
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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