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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a11f
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302...    30   1.4  
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324...    30   1.9  
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277...    29   2.5  
02_03_0378 + 18327622-18329826                                         29   2.5  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    29   2.5  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    29   3.3  
04_04_0881 + 29055724-29059197                                         28   7.6  
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    28   7.6  

>02_04_0080 -
           19529575-19529643,19529756-19529938,19530061-19530210,
           19530297-19530379,19530497-19530599,19530709-19530918,
           19531023-19531183,19531275-19531351,19531483-19531610,
           19531695-19531935,19532047-19532180,19532261-19532435,
           19532587-19532656,19532746-19532803,19532887-19532994,
           19533088-19533283,19533381-19533727,19534008-19534034,
           19534334-19534336
          Length = 840

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 253 PSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTI 405
           P SQ Y +   ++   V     +  IL Y E TY+    G  +Y+AT   I
Sbjct: 604 PLSQCYKKLGCSINRVVEDSEDYKMILKYLEKTYEPVKVGDVVYSATVERI 654


>01_01_0426 +
           3234987-3235935,3236744-3236782,3237044-3237409,
           3240871-3242315
          Length = 932

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +1

Query: 208 SCNQKIQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYN 387
           S +     + S K +  S  + E N  V    A++S    ILD ++N+++ QFP    + 
Sbjct: 48  SIHSSFSRLRSLKIIDLSVNW-ELNGKVPEFFAEISSLS-ILDISDNSFEGQFPTKIFHL 105

Query: 388 ATTNTISNSFYSNFMQNSGNLMTGN 462
            +  T+  S  ++   N    + GN
Sbjct: 106 KSLRTLDLSMNTDLSINLPEFLDGN 130


>11_01_0361 +
           2772193-2772334,2773457-2773587,2773872-2773985,
           2774303-2774459,2774577-2775000,2775238-2776030,
           2776182-2776241,2776952-2777593
          Length = 820

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 421 SNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECH--NYTSHKYEDLKMRNSSNYQQEKLP 594
           +N  +NS    TG+  S   P  F++ N   + H   YT+HK  +  + N SN       
Sbjct: 267 NNLSENSKGTATGHAES--CPSHFVEINLEKQHHLNGYTNHKLNEKDIFNHSN---SSAF 321

Query: 595 SNYKTSRRESATK 633
           S Y   R ES+ +
Sbjct: 322 SRYGNKRIESSAQ 334


>02_03_0378 + 18327622-18329826
          Length = 734

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +1

Query: 190 ALLRGGSCNQKIQDIS-SAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQQF 366
           A+  G  CN      S S K    + K++  +++  +GV    H     + T  TY  Q 
Sbjct: 223 AVETGYPCNGTSSSFSWSTKQQQQNHKHSYSSASRTSGVPGTGHGVYQQENTYETYNNQS 282

Query: 367 PGTNLYNATTNTISNSFYSN 426
              N Y+ T N+   + YS+
Sbjct: 283 FQWNQYSKTNNSAGTNAYSS 302


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 265 KYNEFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTISNSFYSN 426
           +YN+    V    A + HF  +LD  +N  +  FP   L N    T+  S+ +N
Sbjct: 317 QYNDLYGPVPDSFADL-HFLRVLDLADNDLEGLFPKRILQNRNLTTVHISYNTN 369


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +1

Query: 385 NATTNTISNSFYSNFMQNSGNLMTGNYASGPFPG--DFI--DYNQPTECHNYTSHKYEDL 552
           N TTN ++NS   ++++  G      +  G      +F+   YN+  E  ++TSH  E++
Sbjct: 518 NITTNEMANSMRYSYLRGPGGRFRNPFDHGARKNCSEFLLNGYNEDIERLDHTSHTDEEM 577

Query: 553 KMRNSSN 573
            M   +N
Sbjct: 578 GMIQMTN 584


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +1

Query: 397 NTISNSFYSNFMQNSGNLMT----GNYASGPFPGDF 492
           N++S     +F+ NS NL T    GN  SGP P  F
Sbjct: 136 NSLSGPIPQSFLANSTNLQTFDVSGNLLSGPVPVSF 171


>01_06_1123 +
           34671365-34671883,34672366-34672625,34673045-34673143,
           34673237-34675178,34675588-34675658,34676158-34676307,
           34676963-34677038,34677131-34677232,34677707-34677855,
           34678214-34678364
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 382 YNATTNTISNSFYSN---FMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSH 537
           YN+ +   SNS Y++   +  NS N  +G+Y+     G     ++P +   Y+S+
Sbjct: 793 YNSNSAWSSNSSYNSNSAWSNNSNNSWSGSYSDNGGTGSGSSASRPNQTAGYSSY 847


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,104
Number of Sequences: 37544
Number of extensions: 297207
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)

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