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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a04f
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313...    31   0.99 
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659...    30   1.3  
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378...    29   2.3  
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957...    29   3.0  
01_05_0612 - 23652121-23652400,23653031-23654427                       29   4.0  
06_03_0739 + 24004629-24005219                                         28   5.3  
05_04_0069 - 17639386-17641380                                         28   5.3  
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666...    28   5.3  
10_08_0032 - 14288522-14290465                                         28   7.0  
03_02_0892 - 12218803-12218864,12219395-12219740                       27   9.2  
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598...    27   9.2  
01_06_1564 - 38276207-38276434,38276571-38276707,38277214-382776...    27   9.2  

>02_03_0351 +
           18030656-18030823,18030963-18031113,18031214-18031309,
           18032027-18032103,18032627-18032706,18033216-18033276,
           18034153-18034220,18034312-18034393,18034552-18034638,
           18035009-18035086,18035336-18035455,18035554-18035730
          Length = 414

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 621 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 457
           TRA H SG+ST+ G++   +    D PD+D   L+        + P+ SP  + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185


>01_05_0671 -
           24164490-24164544,24164920-24165086,24165787-24165941,
           24166291-24166458,24167471-24167552
          Length = 208

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +3

Query: 24  YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 146
           + +YH+  GPW  C   C GG  Y+    Y  L D   +H PV   SC
Sbjct: 83  HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130


>01_05_0302 +
           20637139-20637291,20637390-20637476,20637609-20637836,
           20638014-20638184,20638843-20638896,20639028-20639174,
           20639326-20639706
          Length = 406

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 82  TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 198
           TNPQ +IGGS + ++ Y    +  Y +++  W    GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286


>06_01_1145 -
           9575173-9575553,9575712-9575858,9575971-9576024,
           9576692-9576862,9577004-9577231,9577392-9577478,
           9577600-9577761
          Length = 409

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 82  TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 198
           TNPQ +IGGS + ++ Y       Y +++  W    GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289


>01_05_0612 - 23652121-23652400,23653031-23654427
          Length = 558

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 277 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 369
           G T A S      ++R++  +HPN NR+T DSD
Sbjct: 64  GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96


>06_03_0739 + 24004629-24005219
          Length = 196

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 226 AAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIH 336
           AAH PY +   R+ +  G     +GG   +  RII H
Sbjct: 160 AAHTPYSECPSRFAVADGEGRVYAGGYAWSPRRIIRH 196


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 214 SILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNV---NRIIIHPNYNRRTADSDLCILR 384
           S L AAH  +GDA G W +        S GV  NV   N ++   N + R  D+ L ++R
Sbjct: 90  SALIAAHASHGDAEGAWGL---LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR 146


>02_04_0343 -
           22166148-22166318,22166422-22166465,22166563-22166626,
           22166729-22167109,22167296-22167475,22167661-22167790,
           22167844-22167946,22168060-22168093,22168216-22168300,
           22168389-22168453,22168592-22168690,22168960-22169025,
           22169200-22169439
          Length = 553

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 454 GDNQVVWAAGWGATSLGGSNSEQLRHVQV-WTINQNACVQRYRPINRAITANMLCSGV 624
           GD +   AAGW A S   +  E+ R +Q   ++  +A    +R I R   A M+  G+
Sbjct: 7   GDREGKSAAGWTALSTTKTTLEEKRRLQANGSVGGDAGTSGFRRIVRLFFACMVAGGI 64


>10_08_0032 - 14288522-14290465
          Length = 647

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 271 RVGSTFANSGGVVH-NVNRIIIHPNYNRRTADSDLCILRSNSNIAY 405
           R+G   A++  ++  +VN+++IHP   R+  +  +  +     +AY
Sbjct: 465 RIGELVASNFSIIGVDVNQVVIHPRLGRKGYEMIIAFMNPEGMLAY 510


>03_02_0892 - 12218803-12218864,12219395-12219740
          Length = 135

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 193 GNILNQRSILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADSDL 372
           GN+ + R  ++AA     +A  R R R      +  G+VH+    ++ P Y +   D  L
Sbjct: 59  GNLADMREAVAAARHQLAEARRRRRARDSGDGGSGAGIVHDYRPAVL-PFYEKWRKDYGL 117


>03_02_0741 -
           10857656-10857844,10858315-10858848,10859516-10859824,
           10860521-10860622,10861446-10861613,10862734-10862847,
           10863003-10863107,10863206-10863336,10863680-10863804,
           10863890-10864061,10864411-10864505,10864771-10864841,
           10864923-10865009,10865119-10865184,10865401-10865499,
           10866631-10866672,10866757-10866822,10866910-10867101,
           10867224-10867289,10868473-10868811
          Length = 1023

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 191 PQDCHH*FQFHVYNKAAIPGYWLMLVVEPPIILCGLV 81
           P+DCH      + ++   PG+++ + V+ P +L  LV
Sbjct: 108 PEDCHTVIALPLPHQPLFPGFFMAMSVKDPKLLKALV 144


>01_06_1564 -
           38276207-38276434,38276571-38276707,38277214-38277621,
           38277895-38278256,38278427-38278524,38278727-38278863,
           38279346-38279444,38279753-38280053
          Length = 589

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -1

Query: 378 DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKD 199
           D    ++ +S +      S H MH T +V     +  TP+  ++++ T+ GT   S  K 
Sbjct: 276 DTHSVLTKSSPVSYFASLSYHEMHETSSVVGSSMSYLTPSMSAMSLTTIDGTDSLSNGKG 335

Query: 198 V 196
           V
Sbjct: 336 V 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,416,408
Number of Sequences: 37544
Number of extensions: 432830
Number of successful extensions: 1242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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