SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A05
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451    120   7e-28
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009    118   3e-27
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...   102   2e-22
09_02_0445 + 9446171-9447496                                           29   2.3  
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    29   2.3  
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095...    29   2.3  
12_01_0899 - 8689125-8689383,8689540-8689826                           29   3.1  
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255     29   3.1  
09_04_0201 + 15543318-15543488,15543956-15544069                       28   4.1  
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    27   7.2  
04_04_1576 - 34551095-34552645                                         27   7.2  
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    27   9.5  
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729...    27   9.5  
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056     27   9.5  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score =  120 bits (289), Expect = 7e-28
 Identities = 57/110 (51%), Positives = 72/110 (65%)
 Frame = +1

Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGGP 357
           RLY +    GYKR   NQ+ENT+L+++EG   + +  +Y GK   YVY+A  ++   GG 
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66

Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
               T  R IWGKVTRPHGNSG VRAKFKSNLP  +MG  +RV +YPS I
Sbjct: 67  ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score =  118 bits (284), Expect = 3e-27
 Identities = 56/118 (47%), Positives = 75/118 (63%)
 Frame = +1

Query: 154 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXK 333
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+A  
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61

Query: 334 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
           ++          + +R IWGKVTRPHGNSG VRAKF+SNLP  +MG  +RV +YPS I
Sbjct: 62  KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score =  102 bits (245), Expect = 2e-22
 Identities = 49/105 (46%), Positives = 66/105 (62%)
 Frame = +1

Query: 154 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXK 333
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+A  
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61

Query: 334 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 468
           ++          + +R IWGKVTRPHGNSG VRAKF+SNLP  +M
Sbjct: 62  KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98


>09_02_0445 + 9446171-9447496
          Length = 441

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = -3

Query: 429 DTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLXSSVHIDAMLASIKDCIITVFCS--FN 256
           +T     W GH  P   +   F++G  G W    S   ++     + + +    CS  + 
Sbjct: 220 ETPYCGYWHGHGTPPRPRAYVFSSGVDGGWRESDSGSDVELPSLELINFVGRAGCSLYWG 279

Query: 255 LEESGVLVLVA*TTLISCEYGLCVQPAVAG 166
           L+    ++ +  TT    E+ L   PA+ G
Sbjct: 280 LDGKDAMLALHKTT---AEFSLVTIPAIVG 306


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 501 GRIQHHSYXVSHSLGREVRLE 439
           GR+ HHS+ VS  L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144


>04_03_0827 -
           20108937-20109046,20109146-20109234,20109400-20109548,
           20109801-20109942,20110530-20110645,20111141-20111458
          Length = 307

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -1

Query: 365 LPRGPPGIGVLXLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 213
           +P+ PPG     LA +   Q L        R+FA  T   A  SC +RR R
Sbjct: 87  VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 425 LPELPCGRVTLPQIARSLVFLPRGPP 348
           LPE PC R+ LP+    +  LP  PP
Sbjct: 35  LPEPPCARLLLPEPPWGMAALPPEPP 60


>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
          Length = 965

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/97 (24%), Positives = 36/97 (37%)
 Frame = +2

Query: 194 PYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELXRGHQFPEVPVAKKP 373
           P S  +S       R  LSS ++   + M  S M +   S+C+    G++     +A  P
Sbjct: 385 PSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERERADMASSP 444

Query: 374 SCVLSGAR*PAHMATLAVSEPSSSLTSLPRLWDTXYE 484
            C    A        L +  PSS+     R  D   E
Sbjct: 445 GCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKARE 481


>09_04_0201 + 15543318-15543488,15543956-15544069
          Length = 94

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 407 GRVTLPQIARSLVFLPRGPPGIGVLXL 327
           GR+  PQ + S V  PRG PG+ VL L
Sbjct: 6   GRLPRPQGSSSAVPRPRGLPGVSVLLL 32


>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
            3983250-3983301,3983497-3983654,3983756-3985617,
            3986029-3986093,3986176-3986340,3986836-3986893,
            3987479-3987590,3987661-3987712,3988080-3988140,
            3988220-3988377,3988705-3988787,3988897-3988945,
            3989122-3989185,3990225-3990317,3990410-3990543,
            3991364-3991585,3991815-3991937,3992103-3992267,
            3993064-3993450
          Length = 1479

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 359  VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTXYE*C 490
            +A +P+CVL G +      T + ++   SSS+    RLWDT  + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275


>04_04_1576 - 34551095-34552645
          Length = 516

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 325 LCTHRRNACQHKRLHHYGLLLL 260
           LC H   AC   RLH +GL LL
Sbjct: 77  LCNHLLIACFKSRLHRHGLRLL 98


>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
            18443630-18443664,18444528-18444886,18445304-18445450,
            18445849-18447954,18448300-18448494,18448629-18448709,
            18448758-18448874,18449281-18449370,18449466-18449552,
            18450293-18450315,18450675-18450804
          Length = 1362

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 337  TPIPGGPRG-KKTKLRAIWGKVTRPH-GNSGSVRAKFKSNLPAQAMGHXIR 483
            T +PGG R  K+ + R +  ++  P    +GSV A+ K N   + +GH +R
Sbjct: 1097 TALPGGTRDLKRVRFRNL--RLCPPFLETAGSVSARHKQNNGGKRIGHGLR 1145


>03_02_0306 +
           7290086-7290283,7290998-7291154,7291270-7291377,
           7291494-7291621,7291733-7291861,7291945-7292012,
           7292130-7292361
          Length = 339

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 495 IQHHSYXVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 355
           I  H + + H   R+  ++  +       W G L P+S +L FF  G
Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294


>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
          Length = 530

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 287 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 153
           T +L S+ P +  R  F+ W+R      V     +++PW G   L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,344
Number of Sequences: 37544
Number of extensions: 301733
Number of successful extensions: 757
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -