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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20010
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286...    56   1e-08
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108...    55   2e-08
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960...    51   3e-07
04_01_0039 + 455760-457631                                             29   1.5  
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084           28   3.5  
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888...    28   3.5  
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570...    27   6.1  

>05_01_0365 +
           2865496-2865588,2865673-2865856,2866791-2866948,
           2867035-2867247,2867330-2867560
          Length = 292

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 31/76 (40%), Positives = 44/76 (57%)
 Frame = +3

Query: 30  MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 209
           MAQII G  VA  I  ++   V  L S  +   P LA+V VG R+DS  Y++MK KA  +
Sbjct: 1   MAQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAE 59

Query: 210 IGIAAEHIRLPRDITK 257
           +GI +  + L  DI++
Sbjct: 60  VGIRSVDVDLAEDISE 75



 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 21/51 (41%), Positives = 35/51 (68%)
 Frame = +2

Query: 263 LLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
           L+A++  LN  P+VHGI+VQ+PL     I+  ++ + +S +KDVDG + +N
Sbjct: 78  LVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEKDVDGFHPLN 126


>02_01_0156 -
           1086750-1086920,1087680-1087847,1087935-1088171,
           1088763-1089073,1089343-1089571
          Length = 371

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 27/72 (37%), Positives = 42/72 (58%)
 Frame = +3

Query: 33  AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 212
           A+II G  VA  I  ++  ++ +++    G  P LA++ VG R+DS  Y+R K KA E +
Sbjct: 80  AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138

Query: 213 GIAAEHIRLPRD 248
           GI +  + LP D
Sbjct: 139 GIKSYEVNLPED 150



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +2

Query: 260 ELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
           E+L  I + N  PSVHGI+VQ+PL   H ++   + +AVS +KDVDG + +N
Sbjct: 155 EVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFHPLN 204


>09_02_0466 +
           9599389-9599662,9600324-9600643,9600950-9601186,
           9601278-9601445,9601778-9601966
          Length = 395

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = +3

Query: 33  AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 212
           A II G  VA  I   + ++V ++++   G  P LA+V VG R DS  Y+R K+K  E++
Sbjct: 98  ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156

Query: 213 GIAAEHIRLPRDITK 257
           GI +    LP + T+
Sbjct: 157 GIKSLLAELPGNCTE 171



 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +2

Query: 275 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 415
           ++  NE PSVHGI+VQ+PL     +D  R+  A+S +KDVDG + +N
Sbjct: 178 VSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHPLN 222


>04_01_0039 + 455760-457631
          Length = 623

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 275 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS 379
           ++ LNE P+++G +V +  DSD  ++   + DAV+
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVT 502


>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
          Length = 380

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 125 EARPF*TQPRHLLTQVIFYRS 63
           EAR F  QP+H LT ++ +RS
Sbjct: 338 EARSFEPQPKHRLTNLVIFRS 358


>06_01_1084 +
           8883301-8883515,8883736-8884063,8884764-8885022,
           8885581-8885681
          Length = 300

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 69  IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 158
           I+NDL Q++T  R+ S+W G   + A   VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191


>04_03_0925 -
           20856628-20856690,20856786-20856845,20856924-20857001,
           20857127-20857192,20857542-20858675,20858991-20860283
          Length = 897

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 185 PDVDVGVLAPAXLHDGKPGLEARPF*TQPRHLLTQVIFYRSCNFNP-RYNLCH 30
           PD   G  A   +   KPG +   +  QPRH     +F  SC  NP + N+ H
Sbjct: 272 PDSRTGCNAHLVIRRKKPGAKLEVYAFQPRH--NHPLFATSCMPNPLQPNVVH 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,717
Number of Sequences: 37544
Number of extensions: 181393
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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