Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0032
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604... 29 1.9
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 28 3.3
07_03_0655 - 20312389-20312560,20312785-20312936,20313049-203132... 28 4.3
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 28 4.3
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 28 4.3
01_06_1608 - 38612754-38616947,38617030-38617095 28 4.3
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 27 5.7
07_01_0704 - 5304639-5305571 27 7.5
>04_03_0888 -
20559435-20559565,20559674-20559740,20560217-20560477,
20560783-20560848,20560971-20561019,20561441-20561491,
20561568-20561620,20561743-20561794,20561867-20561955,
20562044-20562135,20562298-20562351,20563411-20563462,
20563775-20563963
Length = 401
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 227 GHTVWXTLGLLIEGQIKRVQCVLLAR-HGRKHQLQPSDVNYRANIWAL--KQVGCTHILA 397
GH+ T+ L ++ I+ + +R GR ++ PSDV+ A+ W L + TH+
Sbjct: 297 GHSSKQTMPLNVQQDIQETPELNASRAFGRMKKITPSDVDTDADYWLLTDDDISITHMWT 356
Query: 398 TTA 406
T +
Sbjct: 357 TAS 359
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 218 FDLILEKRRIIEARTSDNXDLYFSYIAHIDGTIQH 114
F ++ EK R E SD+ YF I H +G I H
Sbjct: 434 FYVLYEKWRRAEVPKSDSVTQYFKNITHANGVIIH 468
>07_03_0655 -
20312389-20312560,20312785-20312936,20313049-20313207,
20313282-20313531,20313627-20313743,20313842-20313907,
20314008-20314183
Length = 363
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 375 SAALTSSPRPPLGL*LKNTGLGIWSYWTI 461
+AA S LG+ L T + IWS+WT+
Sbjct: 173 AAAAHSKKNWALGIFLMTTSVVIWSFWTV 201
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 236 VWXTLGLLIEGQIKRVQCVLLARHGRKHQLQPS 334
+W +EG + CV L + G KH+ PS
Sbjct: 1093 IWEETSFQLEGLQRLKSCVRLEKEGLKHRTSPS 1125
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 185 EARTSDNXDLYFSYIAHIDGTIQHYTHRYKNFPISVK 75
+A TS N + +FS H T++H+ +K+ P +VK
Sbjct: 714 DATTSSNGEAFFSSDLHKPKTLEHFWDSFKS-PTAVK 749
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 236 VWXTLGLLIEGQIKRVQCVLLARHGRKHQLQPS 334
+W +EG + CV L + G KH+ PS
Sbjct: 1097 IWEETSFQLEGLQRLKSCVRLEKEGLKHRTSPS 1129
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 341 NYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVIL 454
++ A +W+L + C +LA A L EY P D I+
Sbjct: 1096 DWTARVWSLTRGTCDAVLACHAGPILCVEYSPSDKGII 1133
>07_01_0704 - 5304639-5305571
Length = 310
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 361 GT*ASRLHSHPRHDRHWV 414
G A RLH PRHDR++V
Sbjct: 129 GRLAIRLHQQPRHDRNFV 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,168,379
Number of Sequences: 37544
Number of extensions: 230139
Number of successful extensions: 506
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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