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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0020
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   130   4e-31
01_06_1293 - 36050847-36051304,36052343-36052826                       28   2.3  
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731...    27   4.0  
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093...    27   4.0  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    27   7.0  
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832     27   7.0  
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280           27   7.0  
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399...    27   7.0  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    27   7.0  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  130 bits (314), Expect = 4e-31
 Identities = 56/83 (67%), Positives = 69/83 (83%)
 Frame = +3

Query: 21  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 200
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+ 
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 201 MFQLPKLYAKLHYCVSCASTAKL 269
            + LPKLYAK+H+CVSCA  A +
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHI 83



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 254 LHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 349
           +H+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 79  IHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>01_06_1293 - 36050847-36051304,36052343-36052826
          Length = 313

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 180 NDASVYPMFQLPKLYAKLHYCVSCASTAKLSGT 278
           N+AS YP  Q P LY  +  C    STA+   T
Sbjct: 175 NNASYYPQQQTPLLYPGMEVCPHDKSTAQPPAT 207


>07_03_0011 +
           12370624-12370684,12372573-12372718,12372793-12373129,
           12374323-12374452,12375346-12375406,12375572-12375618,
           12376873-12376950,12377195-12377345,12377495-12377558,
           12377735-12377893,12378007-12378128,12378952-12378981,
           12379050-12379124,12379563-12379644,12379809-12379938,
           12381417-12382164,12382833-12383054,12383127-12383276,
           12384851-12384904,12384985-12385058,12386130-12386204,
           12386365-12386584
          Length = 1071

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 80  REMHKLRAVRAKGQGHQKVRD*EHRRSGGGQR 175
           R+  K ++ R K +G +K R  EH R  GG+R
Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132


>02_05_1197 -
           34908382-34908582,34908664-34908837,34909239-34909337,
           34909444-34909644,34910229-34910336,34910498-34910882,
           34911132-34911584,34911868-34912094,34912211-34912270
          Length = 635

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 159 AAAVRDINDASVYPMFQLPKLYAKLHYCVSCASTAK 266
           +AA RD+ +  V+PM  L  LY +L   VS   TA+
Sbjct: 40  SAAERDLLNFMVFPMLLLRLLYGQLWITVSRHQTAR 75


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 256 PQQSCQEQIEERQKNPYSSQE 318
           PQQS Q+Q EE+Q  P SS +
Sbjct: 617 PQQSQQQQPEEQQSIPQSSNQ 637


>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
          Length = 433

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 24  TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 173
           T  RR    A  G G   AV C +CA   P + A+   +   +  A   R
Sbjct: 78  TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127


>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
          Length = 422

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 230 APLLRVMRLHSKVVRNRSKKDRRIRTPPK 316
           +PL R++R    +    +KK+RR+R P K
Sbjct: 317 SPLFRILRTLFGLCSAEAKKNRRLRNPAK 345


>08_02_1601 -
           28138206-28138597,28138928-28139054,28139150-28139914,
           28140714-28140929,28141433-28141903
          Length = 656

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 188 GIVNISDRRRFYDVPNHELFDGLVLWHAPRAVCASHGFN--VTTSMLGASSIT 36
           GI  + D   +YD  +  LF+ L+    P A  +SH F+  V T  +  S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 170 DRRRFYDVPNHELFD 126
           DR  FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,103
Number of Sequences: 37544
Number of extensions: 196830
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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