Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0046
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 55 3e-08
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432 34 0.069
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899... 31 0.85
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 31 0.85
10_08_0406 - 17688069-17690643,17691065-17691132 30 1.1
12_02_0929 - 24493168-24493458,24493545-24493643,24493768-244938... 29 2.6
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 28 4.6
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 28 4.6
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 55.2 bits (127), Expect = 3e-08
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 43 ALQCSYSFIVSPIIHPRFRRQSTNAGKNGGFTRSDMVLSPQDWTSRIVAKLSPYINVDSP 222
+L S+ F+++P++ P +R G SD+VL P W+S IV K+S +I++D+
Sbjct: 36 SLSSSFDFLLAPLVDPDYR---PTPGSVLPVAASDLVLGPAQWSSHIVGKISEWIDLDAE 92
Query: 223 SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRES-NNLARILQTYYETSHHPSLIWAC 399
+R E L +E+++ L + A ++ R S N AR++ + + L W
Sbjct: 93 DEQLRLDSEITLKQEIAWASHLSLQACVLPPPKRSSCANYARVVNHILQGLTNLQL-WLR 151
Query: 400 VPM 408
+P+
Sbjct: 152 IPL 154
>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
Length = 314
Score = 34.3 bits (75), Expect = 0.069
Identities = 24/101 (23%), Positives = 41/101 (40%)
Frame = +1
Query: 91 RFRRQSTNAGKNGGFTRSDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEEL 270
R+R+ A KN F RS + S+ K + D PS + + +
Sbjct: 139 RWRKYGQKAVKNSPFPRSYYRCT----NSKCTVKKRVERSSDDPSVVITTYEGQHCHHTA 194
Query: 271 SYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIW 393
S+ RG+G A+ IHG + LA + + P +++
Sbjct: 195 SFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPPPQPHMLY 235
>07_03_1568 -
27788314-27788619,27789125-27789294,27789868-27789979,
27790063-27790117,27790201-27790316,27790731-27790812,
27790974-27791228,27791326-27791454,27791539-27791747
Length = 477
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 166 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE--LSYCRGLGVPAIMISIH 318
DW SR++A Y+ +D P+AT D + E + R LG+ +++ H
Sbjct: 203 DWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTH 255
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 124 NGGFTRSDMVLSPQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE 267
N G + SD S D+++ I A+ + Y+NVDS T R + +E
Sbjct: 100 NAGQSPSDQNQSEDDYSTPISARDNTYVNVDSGDETPRTEKRIFWTQE 147
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 310 SIHGRESNNLARILQTYYETSHHPSLIWAC 399
++H S N+ R++ TY+ +H P L W C
Sbjct: 554 TVHVFSSWNIVRMVCTYHRAAHRPWLRWLC 583
>12_02_0929 -
24493168-24493458,24493545-24493643,24493768-24493872,
24494101-24494193,24494438-24494530,24494646-24494699,
24494816-24494917,24495058-24495132,24495245-24495418
Length = 361
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 74 RPLFTHVFVGNPQMPVKMVVLRGQIWF 154
R L T +FVGNP + M ++ WF
Sbjct: 252 RDLITRIFVGNPASRITMPEIKNHPWF 278
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 463 WNEPWYWWS 489
W +PWYWWS
Sbjct: 285 WFKPWYWWS 293
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 28.3 bits (60), Expect = 4.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 463 WNEPWYWWS 489
W +PWYWWS
Sbjct: 244 WFKPWYWWS 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,604
Number of Sequences: 37544
Number of extensions: 318031
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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