Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0034
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 41 8e-04
03_02_0484 + 8805053-8805538 41 0.001
03_02_0483 - 8804021-8804485 41 0.001
03_02_0478 + 8775892-8776377 40 0.002
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 39 0.003
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 38 0.010
01_01_0229 - 1943473-1943922 37 0.013
01_01_0231 + 1951047-1951499 37 0.017
02_02_0077 - 6586638-6587165 35 0.052
01_01_0227 + 1933247-1933699 35 0.069
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.64
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 3.4
07_01_1127 + 10456895-10457388,10457488-10458112 29 3.4
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 4.5
09_03_0036 + 11772940-11773171,11774995-11775104 29 4.5
04_01_0252 - 3329712-3331061 29 4.5
04_03_0801 - 19828175-19828770,19828913-19828994 28 6.0
03_01_0491 + 3720842-3720958,3721904-3723109 28 6.0
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 7.9
04_01_0106 + 1102880-1105691,1105781-1105806 28 7.9
02_02_0489 + 10869482-10871218 28 7.9
>03_02_0485 - 8808139-8808618
Length = 159
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 392 SVESRLSSDGVLSVIAPRKVP 454
+++ + +GVL+V P++ P
Sbjct: 128 QIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 392 SVESRLSSDGVLSVIAPRKVP 454
+++ + +GVL+V P++ P
Sbjct: 130 QIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 392 SVESRLSSDGVLSVIAPRKVP 454
+++ + +GVL+V P++ P
Sbjct: 123 QIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 392 SVESRLSSDGVLSVIAPRK 448
+++ + +GVL+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Frame = +2
Query: 155 PWRHLAAAARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ-- 328
P R LA + + D + ++ D+ + EE+ V D +V+ G+H++++ +
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181
Query: 329 ----HGYISRQ----FTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIP 484
G+ + + R ALP+ C V + L +GVL V P+ E ERK+
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK-----TEVERKVI 235
Query: 485 IAQTGPVRKEVKDQSNGD 538
Q ++K V + + +
Sbjct: 236 DVQIKYLKKLVMENCSDE 253
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 392 SVESRLSSDGVLSVIAPR 445
V++ L +GVL+V P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 392 SVESRLSSDGVLSVIAPR 445
V++ + +GVL+V P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 236 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 391
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 392 SVESRLSSDGVLSVIAPR 445
V++ + +GVL+V P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>02_02_0077 - 6586638-6587165
Length = 175
Score = 35.1 bits (77), Expect = 0.052
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Frame = +2
Query: 137 SREYYRPWRHLAAAARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIV-VEGKHE 313
+R Y R R +A D+ S + +D+ AP ++ V+ DG ++ + G+
Sbjct: 36 TRAYVRDRRAMANTPMDVKELRASGA--LVLAVDMPGVAPADVRVEVEDGNVLAISGERR 93
Query: 314 EKK---DQHG----YISRQ-----FTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPP 457
D G Y+ + F RR+ LPE + V + DGVL+V +K PP
Sbjct: 94 RPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPP 152
Query: 458 AVEGERKIPIAQTG 499
+ R + + G
Sbjct: 153 EPKKPRVVEVKVAG 166
>01_01_0227 + 1933247-1933699
Length = 150
Score = 34.7 bits (76), Expect = 0.069
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 296 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 448
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 311 RVCLQPRCSRPPF*QRFLPGRNAGR 237
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 29.1 bits (62), Expect = 3.4
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Frame = +2
Query: 62 RLMDQHFGLGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLG--SSIKSDKDKFQVNL 235
+ ++ HF + LT + + + R W+ + DL S+ SD D F ++L
Sbjct: 407 KALNDHFNINLTSDQITN----------HIRTWKRKYSKIADLRKLSAALSDDDNFIISL 456
Query: 236 DVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSS 415
D +H+A + I AD + + H K + + T +YA + S L+
Sbjct: 457 DHKHYA-DHIKDHKADAEYLNKPIHNYSKMLVIFGNSLATGKYAKGSATGSASRVHALNE 515
Query: 416 DGVLSVIAPR 445
+ S AP+
Sbjct: 516 ENGASSSAPK 525
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 311 RVCLQPRCSRPPF*QRFLPGRNAGR 237
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 258 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 353
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 256 GRNLC*NGGRLHRG*RQTRGEERSAWLH 339
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 311 RVCLQPRCSRPPF*QRFLPGRNAGR 237
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 88 GADSGRFSQCCSRPPCE-QRILPPVASPCCRGSRPWLQYQK*QG 216
G G CCS PPC Q + PP PC G ++ Y++ +G
Sbjct: 182 GGGGGCKKPCCSPPPCPWQPVCPP--PPC--GGGGYVVYEQPEG 221
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 139 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 41
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 203 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 376
+SDKDK N+D + A E + V+ E K +EK + H Y + R L E
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKE 558
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 158 WRHLAAAARDLGSSIKSDKD-KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEK 319
W+ LAA ++ + +++ ++ K Q N+D+ +P I + + + + KH K
Sbjct: 119 WQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNK 173
>02_02_0489 + 10869482-10871218
Length = 578
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 155 PWRHLAAAARDLGSSIKSDK---DKFQVNLDVQHFAPEEISVKTADGYIVVEGK-HEEKK 322
P AA D G+ + S K D +++ D P+E + T +G I+ G+ H+EK
Sbjct: 430 PKEATTTAASDDGTLVGSKKGKADNGKLDGDTHSVMPKEATAGTQNGGILTGGENHKEKV 489
Query: 323 DQHGYISRQFTRRYA 367
D+ + R YA
Sbjct: 490 DKDANVP-SIRREYA 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,997,430
Number of Sequences: 37544
Number of extensions: 492531
Number of successful extensions: 1500
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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