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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0009
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0905 + 25843547-25844314                                         31   0.74 
05_01_0488 - 4070506-4072277,4072455-4072557                           31   0.74 
07_01_0250 - 1864990-1865005,1865429-1865502,1865588-1865659,186...    30   2.3  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    29   3.0  
02_01_0302 - 2021221-2023305                                           29   3.0  
04_04_0512 + 25806599-25808080                                         29   3.9  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    29   3.9  
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    29   3.9  
11_06_0289 - 21969248-21973516                                         29   5.2  
08_01_0397 - 3509186-3510291,3510322-3512335                           28   9.1  
02_03_0167 - 15923872-15925683                                         28   9.1  
02_03_0131 - 15576422-15577021                                         28   9.1  

>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 426 PVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVH-TASLYHATP 572
           PV +  P V + PVV   P+ +  P V + P+V   PV + T  + + TP
Sbjct: 100 PVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPVTYPTP 149



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           +  P + + PVV   PV +  P + + PVV   P+ +  P V
Sbjct: 103 YPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPTPPV 144


>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 618 LVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQ 439
           L   +   R +L   EE +     C     SEL E  E ++ S++   S  + L+E++ +
Sbjct: 185 LEDELHEVRGKLDASEE-KNMRCHCNFGANSELSEHEEKQQVSDVETSSLQKDLDEVKSE 243

Query: 438 SEALE 424
            EALE
Sbjct: 244 KEALE 248


>07_01_0250 -
           1864990-1865005,1865429-1865502,1865588-1865659,
           1865854-1865920,1866365-1866429,1866812-1866843,
           1867250-1867326,1867445-1867646,1867733-1867859
          Length = 243

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           VLH A  V  T VV +  ++HS  V+    +V SG VV
Sbjct: 60  VLHRAASVDPTAVVEAGAVVHSGAVLGKDVVVGSGAVV 97


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 103 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 201
           TP M+ +  P +M S + +   TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 420 SAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAP 518
           + P  HS P  H+TP   S P   +AP  HS P
Sbjct: 502 TTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPP 534


>04_04_0512 + 25806599-25808080
          Length = 493

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/47 (21%), Positives = 24/47 (51%)
 Frame = +3

Query: 84  IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 224
           +P  V +S+ + +HA   ++       P  GD +++H++ +   + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -2

Query: 165 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 73
           +PR   R  TSR+H   RHDRSV    R Q  S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327


>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
            26449505-26449606,26449696-26449788,26449934-26450181,
            26451088-26451274,26451825-26452043,26452464-26452660,
            26453545-26453875,26454099-26454457,26455141-26455240,
            26455349-26455464,26455547-26455663,26455782-26455880,
            26456057-26456131,26456205-26456286,26457724-26457763,
            26458685-26458769,26458924-26459055
          Length = 1303

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 423  APVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGP 536
            AP+    P+V  TP+V   P+        +AP     P
Sbjct: 1141 APMAQDTPMVQGTPMVQGTPMAEGTTGAQAAPTAQGAP 1178


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -2

Query: 612 QRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQGQSE 433
           ++ ++  E+  V+EE    +   G+R   E  ER +  E  +   R   +G  E + Q +
Sbjct: 419 EKTKKLNEQTGVEEETAVRQGGGGEREEDEKDERGDGEEEGKEERRDMEKGGEERKEQQQ 478

Query: 432 ALEQSESQGQ 403
             E+ E +G+
Sbjct: 479 --EEQEKEGR 486


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 219 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 61
           SRHHH   R    DR     RR+      RE     +R  R ++ E +R  R E
Sbjct: 39  SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92


>02_03_0167 - 15923872-15925683
          Length = 603

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -3

Query: 176 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSML 54
           AG+ +L+ +  +++RGS +     +FDG  N+SVV  W+ L
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTAL 226


>02_03_0131 - 15576422-15577021
          Length = 199

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -2

Query: 195 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 67
           R G  DR    PR   R H  R+ D   DR   R  E +RG R
Sbjct: 20  RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,778
Number of Sequences: 37544
Number of extensions: 327146
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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