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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0060
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0514 - 4270936-4272084                                           33   0.26 
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411...    31   0.80 
04_03_0704 + 18872899-18874191                                         31   1.1  
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234           31   1.1  
12_01_0181 + 1341829-1343022                                           30   1.4  
11_01_0181 + 1435031-1436224                                           30   1.4  
01_06_0138 + 26865895-26865953,26866628-26867870                       30   1.4  
04_01_0484 - 6352556-6352881,6352927-6353692                           29   2.4  
08_02_1104 + 24339463-24340314,24340472-24340786                       29   3.2  
02_01_0243 - 1601977-1602834,1602857-1603063                           29   3.2  
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942...    29   4.2  
02_01_0253 + 1664217-1664378,1664739-1664999,1665116-1665622,166...    29   4.2  
10_07_0062 - 12499872-12501350                                         28   5.6  
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493...    28   5.6  
09_03_0103 - 12383585-12384700                                         28   7.4  
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     28   7.4  
03_03_0067 + 14230211-14231506                                         28   7.4  
04_01_0488 - 6419731-6420843                                           27   9.8  
04_01_0477 - 6221990-6223224,6227722-6228817                           27   9.8  
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    27   9.8  

>05_01_0514 - 4270936-4272084
          Length = 382

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVI 104
           I + LPAK + +CR VC RW+ +I
Sbjct: 29  ILSRLPAKSVRRCRRVCRRWRRLI 52


>11_01_0524 -
           4115125-4115491,4116096-4116180,4116796-4116938,
           4117449-4117654,4118650-4118748,4118958-4118993,
           4119222-4119276,4119505-4119690,4120572-4120759
          Length = 454

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  LTKCREVCIRWKNVIDTLNKYHSLWYK 140
           L +C  VC  W  VIDT +    L+YK
Sbjct: 53  LARCSTVCNSWNRVIDTAHLMRDLYYK 79


>04_03_0704 + 18872899-18874191
          Length = 430

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVID 107
           +S I   LP K LT+C+ VC  W+  ++
Sbjct: 37  VSEILARLPVKTLTRCKSVCRSWRAALE 64


>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
          Length = 487

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 261 STTTNSRQQPRWPAKSRASDIYETERPASTLKPAWCI 371
           +T+T ++Q PRWP+ S A+        A+ L+  W +
Sbjct: 31  ATSTPTKQSPRWPSPSAAASSVLPSGAAALLESRWAL 67


>12_01_0181 + 1341829-1343022
          Length = 397

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNV 101
           +S I   LP K + +CR VC  W++V
Sbjct: 26  MSEILLLLPPKSILQCRAVCKAWRDV 51


>11_01_0181 + 1435031-1436224
          Length = 397

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNV 101
           LS I   LP K + +CR VC  W++V
Sbjct: 26  LSEILLLLPPKSILQCRAVCKVWRDV 51


>01_06_0138 + 26865895-26865953,26866628-26867870
          Length = 433

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVI 104
           L  IFTFLP   + +   VC RW ++I
Sbjct: 79  LERIFTFLPIVSMIRSTAVCKRWHDII 105


>04_01_0484 - 6352556-6352881,6352927-6353692
          Length = 363

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDT 110
           I   LP K L +CR+VC  W+ +  T
Sbjct: 25  ILVRLPPKPLLRCRQVCRAWRRLTST 50


>08_02_1104 + 24339463-24340314,24340472-24340786
          Length = 388

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 15  TXXLSXIFTFLPAKQLTKCREVCIRWKNVID 107
           T  L  I + LP      CR VC RW++ ID
Sbjct: 19  TDVLVDILSQLPTSSRRLCRLVCRRWRDTID 49


>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 45  LPAKQLTKCREVCIRWKNVIDT 110
           LPAK + +CR VC  W+ +  T
Sbjct: 13  LPAKAVLRCRAVCRSWRRITTT 34


>09_04_0747 +
           19892090-19893304,19893471-19893602,19894168-19894215,
           19894697-19894766,19894936-19894963,19896021-19896519
          Length = 663

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNVI 104
           +  +F  LP K L  C  VC +W+++I
Sbjct: 26  IEQVFLSLPVKTLLNCIGVCKQWRSII 52


>02_01_0253 +
           1664217-1664378,1664739-1664999,1665116-1665622,
           1665746-1665802
          Length = 328

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNV 101
           ++ I   LPAK + +CR VC  W+ +
Sbjct: 76  VAEILLRLPAKSVLRCRAVCRSWRRI 101


>10_07_0062 - 12499872-12501350
          Length = 492

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 24  LSXIFTFLPAKQLTKCREVCIRWKNV 101
           L  I   LPA+ + +CR VC  W+ +
Sbjct: 151 LCEILVRLPARSVLRCRAVCTAWRRL 176


>03_05_1063 +
           30048724-30048753,30049036-30049175,30049282-30049336,
           30049419-30049526,30050190-30050288,30050380-30050457,
           30050558-30050635,30051875-30051949,30052117-30052217,
           30052502-30052527,30053224-30053297,30053358-30053379,
           30054108-30054223,30054361-30054618,30054716-30054832,
           30055649-30055699,30055859-30056086,30056550-30056648,
           30056823-30056999,30057298-30057417
          Length = 683

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 347 HTKAGVVYYDLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSNL 475
           H K      +LDT     + ++Y +YN+++   DT+  M +N+
Sbjct: 23  HVKMAAEIKNLDT---DLQMLVYENYNKFISATDTIKRMKTNI 62


>09_03_0103 - 12383585-12384700
          Length = 371

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 24 LSXIFTFLPAKQLTKCREVCIRW 92
          L+ +F  LPA+ L  CR VC  W
Sbjct: 22 LTEVFHRLPARTLASCRLVCKSW 44


>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 152 GL*KRLQIRSPALPSSDHLARALQVSDSVEATAPPRQHYDEFASATT 292
           GL   L  + PAL SS    R     D++ AT  P+Q  ++  S TT
Sbjct: 22  GLDDDLPAKEPALQSSRRNLRRSHSLDNLAATNRPQQQQEQHYSRTT 68


>03_03_0067 + 14230211-14231506
          Length = 431

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 24 LSXIFTFLPAKQLTKCREVCIRWKN 98
          L  I   LPA+ + +CR VC  W++
Sbjct: 12 LDEILLRLPARSILRCRAVCKAWRS 36


>04_01_0488 - 6419731-6420843
          Length = 370

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDT 110
           I   LP K L +CR VC  W+ +  T
Sbjct: 23  ILVRLPPKPLLRCRLVCRAWRRLTST 48


>04_01_0477 - 6221990-6223224,6227722-6228817
          Length = 776

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDT 110
           I   LP K L +CR VC  W+ +  T
Sbjct: 27  ILVRLPPKPLLRCRLVCRAWRRLTST 52



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 33  IFTFLPAKQLTKCREVCIRWKNVIDT 110
           I   LP K L +CR VC  W+ +  T
Sbjct: 418 ILVRLPPKPLLRCRLVCRAWRRLTST 443


>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 338 AGVHTKAGVVYYDLDTLQRSKRAVIY 415
           +G  +K G+VY D +TL+R  +A  Y
Sbjct: 460 SGYTSKFGIVYVDFNTLERHPKASAY 485


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,494
Number of Sequences: 37544
Number of extensions: 336345
Number of successful extensions: 999
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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