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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0004
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877...   122   3e-28
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193...   113   1e-25
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781...   109   1e-24
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429...   109   2e-24
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877...    83   2e-16

>09_03_0117 -
           12486672-12486818,12487438-12487488,12487583-12487729,
           12488037-12488354,12488450-12488604,12488941-12489248,
           12490644-12491038
          Length = 506

 Score =  122 bits (293), Expect = 3e-28
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 AGKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIED 431
           +GKI IGMDVAASEF  KDG YDL+FKN  ++    LS+ +L D+Y +F+KDFP+VSIED
Sbjct: 284 SGKIKIGMDVAASEFLTKDGSYDLNFKNQPNDGAHVLSAQRLCDLYKEFVKDFPIVSIED 343

Query: 432 PFDQDDWSAWANLTGRTPIQIVGDDL 509
           PFDQDDWS+WA+L     IQIVGDDL
Sbjct: 344 PFDQDDWSSWASLQSSVNIQIVGDDL 369



 Score =  113 bits (271), Expect = 1e-25
 Identities = 51/73 (69%), Positives = 62/73 (84%)
 Frame = +1

Query: 34  LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
           LAMQEFM+ P GAS+FSEA+RMGSEVYH LK IIK K+G D+  VGDEGGFAPN+Q+N++
Sbjct: 210 LAMQEFMLLPVGASSFSEALRMGSEVYHALKGIIKAKYGQDACNVGDEGGFAPNVQDNRE 269

Query: 214 ALYLIQDAIQKAG 252
            L L+ DAI+KAG
Sbjct: 270 GLVLLMDAIEKAG 282



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
           VTNPKRIA A+ KKACN LLLKVNQIG+
Sbjct: 371 VTNPKRIAEAIGKKACNALLLKVNQIGT 398


>06_01_0262 -
           1930552-1930632,1931096-1931152,1931236-1931287,
           1931373-1931461,1931551-1931601,1931696-1931890,
           1932015-1932095,1932205-1932267,1933045-1933119,
           1933194-1933352,1933353-1933463,1933536-1933616,
           1933721-1933807,1933920-1933967,1934357-1934421,
           1935002-1935065,1935220-1935288
          Length = 475

 Score =  113 bits (272), Expect = 1e-25
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +1

Query: 37  AMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDA 216
           A+QEFMI PTGAS+F EAM+MG EVYHHLK IIK+K+G D+T VGDEGGFAPNIQ NK+ 
Sbjct: 199 AVQEFMILPTGASSFKEAMKMGVEVYHHLKSIIKKKYGQDATNVGDEGGFAPNIQENKEG 258

Query: 217 LYLIQDAIQKAG 252
           L L++ AI KAG
Sbjct: 259 LELLKAAIAKAG 270



 Score =  102 bits (244), Expect = 2e-22
 Identities = 52/89 (58%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
 Frame = +3

Query: 258 GKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDY-LSSDKLADVYLDFIKDFPMVSIE 428
           GK+ IGMDVAASEF+  KD  YDL+FK  D+N G + +S D L DVY  F+ ++P+VSIE
Sbjct: 273 GKVVIGMDVAASEFYSEKDKTYDLNFKE-DNNDGSHKISGDSLKDVYKSFVSEYPIVSIE 331

Query: 429 DPFDQDDWSAWANLTGR--TPIQIVGDDL 509
           DPFDQDDW+ +A LT      +QIVGDDL
Sbjct: 332 DPFDQDDWATYAKLTDEIGQQVQIVGDDL 360



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = +2

Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
           VTNP R+A A+ +K CN LLLKVNQIGS
Sbjct: 362 VTNPTRVAKAISEKTCNALLLKVNQIGS 389


>03_02_0365 -
           7816966-7817046,7817441-7817492,7817590-7817678,
           7817762-7817854,7817900-7818094,7818172-7818249,
           7818353-7818415,7818806-7818880,7818958-7819038,
           7819329-7819409,7819516-7819602,7819682-7819729,
           7820317-7820381,7820566-7820629,7821254-7821322
          Length = 406

 Score =  109 bits (263), Expect = 1e-24
 Identities = 49/70 (70%), Positives = 60/70 (85%)
 Frame = +1

Query: 43  QEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKDALY 222
           QEFMI PTGAS+F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK+ L 
Sbjct: 138 QEFMILPTGASSFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLE 197

Query: 223 LIQDAIQKAG 252
           L++ AI+KAG
Sbjct: 198 LLKTAIEKAG 207



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
 Frame = +3

Query: 258 GKIDIGMDVAASEFF-KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDP 434
           GK+ IGMDVAASEF+ +D  YDL+FK  +++    +S D L +VY  F+ ++P+VSIEDP
Sbjct: 210 GKVVIGMDVAASEFYTEDQTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIEDP 269

Query: 435 FDQDDWSAWANLTGR--TPIQIVGDDL 509
           FDQDDW  +A +T      +QIVGDDL
Sbjct: 270 FDQDDWVHYAKMTEEIGDQVQIVGDDL 296



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +2

Query: 524 KRIATAVEKKACNCLLLKVNQIGS 595
           +R+A A++ KACN LLLKVNQIGS
Sbjct: 316 QRVAKAIKDKACNALLLKVNQIGS 339


>10_02_0022 -
           4290708-4290788,4291254-4291305,4291396-4291484,
           4291565-4291615,4291699-4291893,4292010-4292090,
           4292190-4292252,4292480-4292554,4292630-4292710,
           4292784-4292888,4292977-4293057,4293156-4293242,
           4293322-4293369,4293923-4293987,4294109-4294172,
           4294828-4294896
          Length = 428

 Score =  109 bits (262), Expect = 2e-24
 Identities = 51/74 (68%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
 Frame = +1

Query: 34  LAMQ-EFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNK 210
           LAMQ EFMI PTGA++F EAM+MG EVYH+LK +IK+K+G D+T VGDEGGFAPNIQ NK
Sbjct: 169 LAMQAEFMILPTGAASFKEAMKMGVEVYHNLKSVIKKKYGQDATNVGDEGGFAPNIQENK 228

Query: 211 DALYLIQDAIQKAG 252
           + L L++ AI+KAG
Sbjct: 229 EGLELLKTAIEKAG 242



 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 4/88 (4%)
 Frame = +3

Query: 258 GKIDIGMDVAASEFF--KDGKYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIED 431
           GK+ IGMDVAASEF+  KD  YDL+FK  +++    +S D L +VY  F+ ++P+VSIED
Sbjct: 245 GKVVIGMDVAASEFYNDKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVSEYPIVSIED 304

Query: 432 PFDQDDWSAWANLTGR--TPIQIVGDDL 509
           PFDQDDW  +A +T      +QIVGDDL
Sbjct: 305 PFDQDDWEHYAKMTAEIGEQVQIVGDDL 332



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = +2

Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
           VTNP R+A A+++K+CN LLLKVNQIGS
Sbjct: 334 VTNPTRVAKAIQEKSCNALLLKVNQIGS 361


>03_02_0477 -
           8770905-8770985,8771164-8771361,8771939-8772025,
           8772094-8772179,8772270-8772368,8772431-8772551,
           8773251-8773331,8773643-8773723,8773972-8774088,
           8774185-8774256,8774621-8775055
          Length = 485

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = +1

Query: 34  LAMQEFMIFPTGASTFSEAMRMGSEVYHHLKKIIKEKFGLDSTAVGDEGGFAPNIQNNKD 213
           L +QE MI P GA  F EAM+MGSE YHHLK II EK+G +S  +GD+GGFAPNI    +
Sbjct: 205 LPIQEIMILPVGAKNFEEAMQMGSETYHHLKDIILEKYGSNSCNIGDDGGFAPNISRQWN 264

Query: 214 -ALYLIQDAIQKAG*LARSTL 273
            A+     A+     + R+TL
Sbjct: 265 YAIQYCWSAVNLMAYINRTTL 285



 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/66 (39%), Positives = 40/66 (60%)
 Frame = +3

Query: 312 KYDLDFKNPDSNPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGRTPIQ 491
           KYD++FK  + +   + ++D L ++Y     ++P+VSIE PFD+DDW      T     Q
Sbjct: 305 KYDMEFKFAEKSGQGFKTADDLIEIYSQLCSEYPLVSIEQPFDKDDWEHSKKFTTLELCQ 364

Query: 492 IVGDDL 509
           +VGDDL
Sbjct: 365 VVGDDL 370



 Score = 34.3 bits (75), Expect = 0.075
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 512 VTNPKRIATAVEKKACNCLLLKVNQIGS 595
           +++P+RI  AV +  CN L+LK NQ+G+
Sbjct: 372 MSDPERIKRAVNEYTCNALVLKANQVGT 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,243
Number of Sequences: 37544
Number of extensions: 384255
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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