Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0015
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549...    29   2.1  
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435     29   2.8  
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755...    28   5.0  
05_03_0458 + 14280953-14281866,14281964-14282912                       28   5.0  
10_06_0175 - 11490280-11491000,11491869-11491947,11493613-114938...    28   6.5  
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191           28   6.5  
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     27   8.7  
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791...    27   8.7  

>01_01_0710 +
           5492389-5492745,5493664-5493948,5494121-5494438,
           5494900-5495127,5495884-5495984,5496493-5496604,
           5496654-5496662,5496897-5497340,5497649-5497909
          Length = 704

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 484 TKPTNSSANTGRTHPKLFHTSPILKFSKPTR 576
           T P  SS ++ R + + FH+ P++  +KP++
Sbjct: 504 THPAESSQDSQRVYTRTFHSGPLVNQNKPSK 534


>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
          Length = 415

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 383 PFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRR 496
           P  + P  +  +++  T+ PLSLT A   V++ IP+RR
Sbjct: 7   PATAAPAASPALFSASTSRPLSLTAAAAAVSARIPSRR 44


>11_06_0734 -
           26774471-26774652,26775008-26775137,26775447-26775596,
           26775685-26775918,26775990-26776161,26776285-26776506,
           26776604-26776770,26776880-26777018,26777342-26777693,
           26778175-26778370
          Length = 647

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 424 VVYDMRVSRLRFEGLGSPLSVGVWCVIRPF 335
           ++ D R    + EGL  PLS  + C+  PF
Sbjct: 599 ILRDWRFGHYKMEGLQDPLSCFIRCIFAPF 628


>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +2

Query: 341 SNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSY--IPNRRTVQPIQ 514
           S+  P P  Q  P P    P  T    + PT PP          +S   +P  R+    +
Sbjct: 63  SSPPPLPPLQPTPPPL---PPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSK 119

Query: 515 AEPTQNYFTPAQFLSSQSLPGVGLRYFVP 601
                +  TP +FLSS S P    R+  P
Sbjct: 120 CSAPTSAQTPTRFLSSSSPPPDAPRHLSP 148


>10_06_0175 -
           11490280-11491000,11491869-11491947,11493613-11493811,
           11494003-11494044
          Length = 346

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 341 SNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 508
           + D P P  QWRP  F  QP    + ++     P  L   Q  V S +P  R+  P
Sbjct: 110 AGDKPLPQQQWRPTKFGDQPPQPSLGWSPNLNLPYPLPPTQPTVVS-LPAPRSGGP 164


>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
          Length = 539

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 62  KRPSEFDYRNFDVTCE-RNKGLK 127
           K P E  YR F VTC+ RN  LK
Sbjct: 305 KHPPECGYRTFQVTCDHRNASLK 327


>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 383  AGVSIERWGLVRH*TFLPKPVRELDTAAGEAATAQGPVARWAHPSCRTSP 234
            A V +ERWG +R  T  P  V   D  A E+ T++G   R A    R SP
Sbjct: 1063 ASVMLERWGCLRGST--PANVVADDNTAAESRTSRGQPLRVA--LARASP 1108


>01_03_0205 +
           13777918-13778015,13778402-13778624,13779022-13779198,
           13779277-13779437,13779520-13780519,13780923-13781069,
           13781149-13781376,13781471-13781628,13781807-13782161
          Length = 848

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 20  THPL-VCASDL-LCSRKRPSEFDYRNFDVTCERN 115
           TH L +CA+++     ++P  FDY+NF +  + N
Sbjct: 651 THVLCLCANEIGQAESQQPDRFDYQNFSINDDEN 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,400
Number of Sequences: 37544
Number of extensions: 321539
Number of successful extensions: 932
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)