Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120068.Seq
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612...    30   1.9  
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    29   3.3  
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14...    29   3.3  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    29   4.3  
04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504     28   7.6  
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84...    28   10.0 
02_01_0063 - 451471-451725,451825-451913,452028-452133,452214-45...    28   10.0 

>09_02_0235 +
           6122145-6122206,6122408-6122417,6123515-6123549,
           6124422-6124842,6124978-6125412
          Length = 320

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 591 FVRVCRATNCVFST*PTPERIEVVLAIN 674
           FV V ++TNC+    P PE I+ VLAI+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAIS 246


>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 633 TSKKRNSSRDTREQNVFGFVVSRMLLVVA 547
           +S  R  SRD R +N+FGF VS +L+ +A
Sbjct: 18  SSTTRFMSRDIRAKNIFGFSVSLILINLA 46


>01_01_0020 +
           147147-147313,148450-148548,148634-148742,148856-148927,
           149056-149061,150811-150915,151048-151539,151629-152025,
           152178-153646,154010-154450,154543-155214
          Length = 1342

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
 Frame = +1

Query: 229 VYLQQPPHQRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFN 408
           V  ++PP ++F+ +K+   + D+DD+Q ++  +  +       I+R +I  AT      +
Sbjct: 137 VLAERPPEKKFEWAKVTSSMEDDDDDQ-RLLHSLGVTSADIHDIERRIISQATTDPADSS 195

Query: 409 ---LNSMMQAEQL---IFHLIYNNEEAVNVICDNLKYTEVSQAARNGYTQRLRNYKKHSR 570
              +N   Q +     + H + + +  ++ +   +K  ++ Q   +G        K    
Sbjct: 196 GPTINGGHQPDDALAKLHHKLRSVQIEIDAVASTIKGAKLKQP--SGNKPHEHKGKDQPD 253

Query: 571 HHKPEHVLFACVARRIAFFRR 633
           HH   H+  A  A R+   R+
Sbjct: 254 HHGAGHLQQALAADRLTSLRK 274


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 206 DAYHDDGWFICNSHLINVLKCQKWFCPF--STKTTI 307
           D+YHDDG  +C+ H  ++ K     CPF  ST+TT+
Sbjct: 325 DSYHDDGASLCSKH-HDIFK-----CPFDKSTQTTL 354


>04_04_0123 - 22923058-22923072,22923711-22923723,22924355-22926504
          Length = 725

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 226 MVYLQQPPHQRFKMSKMVLPIFDEDDNQFKMTIARHLVG-NKERGIKRILIPSATNY 393
           ++Y   PP  R + +K+    F+E DN++ + +A   VG      I+R++  S   Y
Sbjct: 396 VIYGALPPETRRQQAKL----FNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKY 448


>07_01_0113 +
           840866-841574,841687-842210,842391-842840,843541-843699
          Length = 613

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 677 FNNYSGFLQNLIRRAVAPEYLQIDTEELSLEIAPRV 784
           +NN++G L N IRR  +   L I +  L   I+P +
Sbjct: 31  YNNFTGALPNSIRRFTSLRMLDISSNNLIGSISPGI 66


>02_01_0063 -
           451471-451725,451825-451913,452028-452133,452214-452342,
           452886-452970,453514-453545
          Length = 231

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 638 NARTHRGGVGDQLFNNYSGFLQNLIRRAVA----PEYLQIDTEELSLEIAPR 781
           N R   GG+ D+L + YSG ++  +  A++    P+ + +D     L+ A R
Sbjct: 47  NVRLFAGGIADKLVSKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASR 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,045,994
Number of Sequences: 37544
Number of extensions: 429729
Number of successful extensions: 974
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)