Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120060.Seq
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          105   5e-23
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...    97   2e-20
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    31   1.3  
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    28   8.8  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  105 bits (251), Expect = 5e-23
 Identities = 45/72 (62%), Positives = 62/72 (86%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLS 439
           EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEAKIEDLS
Sbjct: 81  EKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIEDLS 140

Query: 440 TQATMAAAERFK 475
           +Q    AA++F+
Sbjct: 141 SQLQAQAAQQFR 152



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 693
           +VM+QA+VSRAKAV+ALK +  DIV+AIMELT
Sbjct: 189 LVMTQASVSRAKAVKALKAHDGDIVSAIMELT 220


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 52/94 (55%), Positives = 65/94 (69%), Gaps = 19/94 (20%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKN-------------------ILFVINSPDVYK 382
           EKK+RK M KLG+K + GV RVTI+KSKN                   ILFVI+ PDV+K
Sbjct: 64  EKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLHYQILFVISKPDVFK 123

Query: 383 NPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 484
           +P+SDTY++FGEAKIEDLS+Q    AAE+FKAP+
Sbjct: 124 SPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD 157



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 693
           +VM+QA VSR++AV+ALK    DIV AIMELT
Sbjct: 189 LVMTQATVSRSRAVKALKAANGDIVTAIMELT 220


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 393 QTPTLFLVKPRLKICPHRPPWLQQRDSRHQRPQPLA 500
           Q P    ++ +L   P +PP LQ +   HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279


>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 150 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 64
           S C  +QSL+ ++   +RWP  V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,627
Number of Sequences: 37544
Number of extensions: 303093
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)