Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120050.Seq
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1598 + 28130385-28130881,28130957-28131269                       30   2.5  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    29   3.3  
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541...    29   5.8  
01_06_1642 + 38857326-38857581,38858577-38858818,38859001-388600...    28   7.6  

>08_02_1598 + 28130385-28130881,28130957-28131269
          Length = 269

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 219 CENRPDGYILSYFPLICSSTNLCSV*AGAT-----WCVNAPRIKYSIA 347
           C + PDG  +   PL+ ++TNLC    G +     WC N PR  + ++
Sbjct: 99  CVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWC-NPPREHFDLS 145


>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
            25826596-25827333,25827712-25827919,25828455-25830409,
            25830868-25830960,25831044-25831100,25831189-25831272,
            25831345-25831437,25831622-25832053,25833593-25833933,
            25834663-25835215
          Length = 2061

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +3

Query: 39   RLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNYTFD 185
            +LL +  LNQ +  DY+ +  ++ P+  LR F++  + + E PD +TFD
Sbjct: 1692 KLLFSDSLNQ-IPGDYAEHAEVFSPS-KLRKFSDMDNTIPELPDVFTFD 1738


>02_02_0464 -
           10552347-10552466,10552683-10552928,10553866-10554135,
           10554231-10554413,10554493-10554688,10554775-10555079,
           10555515-10555604,10555689-10555806,10555991-10556088,
           10556187-10556272,10557622-10557736
          Length = 608

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/52 (44%), Positives = 27/52 (51%)
 Frame = +3

Query: 30  MDERLLDTLVLNQHLDKDYSSNEHLYHPTFYLRCFANGAHAVEECPDNYTFD 185
           M   L DTL LNQ LD+D S+          L+ FA  A A+EE  D Y FD
Sbjct: 200 MKNLLCDTLELNQVLDRDVSALS-----GGELQRFAIAARAMEEA-DVYMFD 245


>01_06_1642 +
           38857326-38857581,38858577-38858818,38859001-38860004,
           38860170-38860587,38860673-38860789
          Length = 678

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -1

Query: 507 WLSEFLIRFMHVISCDSLLFKHLKYCASLISA 412
           W S +  +F+ ++ C ++L+KH K+C +L+ A
Sbjct: 618 WNSRWTRKFLFLL-CLAVLWKHWKHCRALVKA 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,568,276
Number of Sequences: 37544
Number of extensions: 481084
Number of successful extensions: 1108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)