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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060083.seq
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...   104   8e-23
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287...    32   0.37 
04_01_0030 - 376883-377524                                             30   1.5  
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460...    30   2.0  
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419     28   6.0  
04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051     28   6.0  
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224...    28   6.0  
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482...    28   7.9  

>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score =  104 bits (249), Expect = 8e-23
 Identities = 55/132 (41%), Positives = 69/132 (52%)
 Frame = +3

Query: 273 LGSYECKLCLTLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFV 452
           + SYECKLCLTLHNNEG+YLAHTQGK+HQ                   P K +  P+K V
Sbjct: 79  VSSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKFAPRKSV 138

Query: 453 KIGRPGYRVTKQXDPETGHRACSSK*IIQRLQRVLYLDIDLCLLMXRRLSLQTADGQYXL 632
           KIGRPGY+VTKQ DP+    +   +     ++              +++       QY L
Sbjct: 139 KIGRPGYQVTKQYDPDMKQHSFLFEIGYPEIEENSKPRHRFMASYEQKVESWDKKYQYLL 198

Query: 633 FAAEPYETIALK 668
           FAAEPYE I  K
Sbjct: 199 FAAEPYEIIGFK 210



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = +2

Query: 512 SLLFQVDYPEIAEGVIPRHRFMSAYXQKIEPPDRRWAVFXICSRAL*NYCFKVPS 676
           S LF++ YPEI E   PRHRFM++Y QK+E  D+++      +       FK+PS
Sbjct: 159 SFLFEIGYPEIEENSKPRHRFMASYEQKVESWDKKYQYLLFAAEPYEIIGFKIPS 213



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/37 (67%), Positives = 26/37 (70%)
 Frame = +1

Query: 145 GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           G K G GG AS      DRRERLR+LALETIDL KDP
Sbjct: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDP 42


>03_06_0561 +
           34728428-34728439,34728529-34728615,34728729-34728750,
           34728843-34728925,34729139-34729171,34729468-34729546,
           34729642-34729694,34729931-34729991,34730168-34730250,
           34730418-34730513
          Length = 202

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 282 YECKLCLTLHNNEGSYLAHTQGKKHQ 359
           Y CK+C  +  +  +YL H  GKKHQ
Sbjct: 82  YYCKVCECVVKDSANYLDHINGKKHQ 107


>04_01_0030 - 376883-377524
          Length = 213

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 139 RPGGKTGGGGVASWSESNRDRRERLRQLALE 231
           R GG   GG V   +++ RD  ERLRQ A E
Sbjct: 106 RSGGGGRGGAVGDCADTLRDAEERLRQSAAE 136


>02_04_0060 -
           19345316-19345453,19345718-19345849,19345937-19346005,
           19346453-19346551,19346702-19346786,19346890-19346990,
           19347294-19347362,19347635-19347675,19348343-19348458,
           19348546-19348702,19349266-19349474,19349811-19349914,
           19350234-19350381,19350463-19350761,19350844-19351377
          Length = 766

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 127 DFQNRPGGKTGGGGVASWSESNRDRRERLRQLAL 228
           D  +RP G +GGGG  SW++   +  +    LAL
Sbjct: 105 DPADRPAGSSGGGGSKSWAQQAEEAYQLQLALAL 138


>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
          Length = 396

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 270 HLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 359
           H   + C +C    N E  +  H +GK+HQ
Sbjct: 157 HAARWSCSVCQVHCNGEWHFDTHLKGKRHQ 186


>04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051
          Length = 312

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 136 NRPGGKT--GGGGVASWSESNRDRRERLRQLAL 228
           N P G    GGG  A W    R RR+R++++ L
Sbjct: 104 NEPAGTALAGGGASAGWLVGRRRRRQRVQEVRL 136


>01_05_0484 -
           22621614-22621676,22621798-22621911,22622006-22622453,
           22623052-22623179,22623747-22623821,22623954-22624040
          Length = 304

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 CKLCLTLHNNEGSYLAHTQGKKHQ 359
           C LC T   ++ + L+H  GKKH+
Sbjct: 96  CSLCKTTTTSKQTLLSHADGKKHR 119


>04_03_0833 +
           20147242-20147849,20147937-20148081,20148157-20148210,
           20148297-20148388,20148957-20149093,20149210-20149464,
           20149598-20149771,20149863-20149960
          Length = 520

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 133 QNRPGGKTGGGGVASWSESNRDRRERLRQLALETI 237
           + R GG  GGGGVA+ S   R  RE     A+ ++
Sbjct: 55  KGRGGGGGGGGGVAAGSSEYRKDREEWTDGAISSL 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,005
Number of Sequences: 37544
Number of extensions: 272336
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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