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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060065.seq
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   123   1e-28
07_01_0578 + 4295386-4296489,4297394-4297507                          123   2e-28
02_03_0152 - 15767985-15768317                                         35   0.053
10_02_0199 + 6668902-6669293,6669825-6669882                           34   0.093
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988     30   1.5  
08_02_1278 - 25838146-25839411                                         30   2.0  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    30   2.0  
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657           30   2.0  
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61...    29   2.6  
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149     29   2.6  
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323...    29   3.5  
03_02_0530 + 9236323-9236346,9236933-9237185,9237872-9238119,923...    29   4.6  
02_04_0457 + 23093020-23093343,23093798-23093806                       29   4.6  
05_05_0015 + 21530547-21531047                                         28   6.1  
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722...    28   8.1  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    28   8.1  

>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  123 bits (297), Expect = 1e-28
 Identities = 52/58 (89%), Positives = 55/58 (94%)
 Frame = +3

Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
           S+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 58  SRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 32/67 (47%), Positives = 44/67 (65%)
 Frame = +1

Query: 490 PSARSG*GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGX 669
           PS     GH IE +PE PLVV+D ++ I KT Q++  L+++ A++D  K   S  +RAG 
Sbjct: 137 PSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGK 196

Query: 670 GKMRNRR 690
           GKMRNRR
Sbjct: 197 GKMRNRR 203



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVARR 264
           + ARPLVSV + E       A   +P V +APIRPD+V   H  +S N RQPY V+RR
Sbjct: 3   AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRR 60


>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  123 bits (296), Expect = 2e-28
 Identities = 51/58 (87%), Positives = 55/58 (94%)
 Frame = +3

Query: 255 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 428
           S+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 59  SRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = +1

Query: 490 PSARSG*GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLXAWSDILKVYKSQRLRAGX 669
           PS     GH IE +PELPLV++D  + I KT QA+  L+++ A++D  K   S  +R G 
Sbjct: 138 PSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGK 197

Query: 670 GKMRNRR 690
           GKMRNRR
Sbjct: 198 GKMRNRR 204



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +1

Query: 103 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVARR 264
           RPLVSV + + +  T   ++  L  VF+AP+RPD+V  VH  +S N RQPY V+RR
Sbjct: 6   RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRR 61


>02_03_0152 - 15767985-15768317
          Length = 110

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = -2

Query: 372 YRRHPDRTYEYHHHGHAEFGRQ----HVQYPMIQ-HWFGDQPPCYAVGLPRV-LGHRNVN 211
           YR  P        HG AEF RQ    H  +P    HW   +PP  A G+P   LG     
Sbjct: 19  YRYRPSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHWSSSEPPLVAAGMPSPGLGRTR-- 76

Query: 210 IIDQVRTDGRLEHEREG 160
                  DGR E E +G
Sbjct: 77  -RASAPLDGRREEEDDG 92


>10_02_0199 + 6668902-6669293,6669825-6669882
          Length = 149

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 228 QELEAALLRSKEAGHQTS--AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 392
           +EL  A   S  A  +    A+SW TGRA A + R R GG  R    A  N   G R
Sbjct: 16  RELARAAASSVAANREGGGGAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72


>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
          Length = 292

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +3

Query: 66  ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 221
           ASL   N  +  P+F V          G SQA  V + GAH  G  Q C  F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175


>08_02_1278 - 25838146-25839411
          Length = 421

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 609 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSS 508
           A +E   LF L+D+LD V   +G+L  LF+  S+
Sbjct: 89  AAREPQRLFRLLDMLDAVARERGRLDELFSGESA 122


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 387 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 280
           HH    + H  + YE+ +  H +  RQ  QY   QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185


>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
          Length = 390

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 360 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 259
           P   + +HHHGH     +  Q     H  G  PP
Sbjct: 33  PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 357 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 259
           D    +HHH H   G  H Q    QH     PP
Sbjct: 32  DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64


>12_01_0073 +
           613316-613447,613611-613802,614067-614232,614460-614845
          Length = 291

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 66  ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 221
           ASL   N  I +PTF +G   +     G S    + + GAH  G  + C  F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176


>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
          Length = 248

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 351 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDQPPCYAVGLPRVLGH 223
           T+++HH HGH  FGR H  +P   H  G     Y  G P    H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGGMVN-YGGGAPYYAAH 184


>06_03_0243 +
           18629793-18630047,18630362-18630442,18631911-18632305,
           18632471-18632926,18633156-18633247,18633528-18633683,
           18635657-18636057
          Length = 611

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +3

Query: 144 AGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLRSKEAGHQTSAESWGTGRAVARIP 323
           +G ++A  + +    P GP    ++  +++L A   R   A  + +A +  T +A   + 
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505

Query: 324 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 422
           R    GG HR G+G  G    GG        WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538


>03_02_0530 +
           9236323-9236346,9236933-9237185,9237872-9238119,
           9239565-9239972
          Length = 310

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 552 YNQGKLGNLFNNVSSA*TSAGTPVAATLPPRP 457
           Y Q  + +  NNV    T   TP+AA  PP P
Sbjct: 214 YQQASMSSYANNVRPGETHGYTPIAAKPPPPP 245


>02_04_0457 + 23093020-23093343,23093798-23093806
          Length = 110

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +3

Query: 267 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 371
           G + S   W  G A A    VRGGG  RSG G  G
Sbjct: 76  GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109


>05_05_0015 + 21530547-21531047
          Length = 166

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 213 SRFYVQELEAALLRSKEAGHQTSAESWGTGRAVARIPR--VRGGGTHRSGQGAFGNMCRG 386
           +RF    L+ AL  +  A  +TS   W  GR   R+PR  V  G     G G    + RG
Sbjct: 76  TRFEYGILKMALRMAVAAAPKTSHRRWRQGRWRRRLPRHPVADGIEDSDGGGGSRALLRG 135

Query: 387 GRMFAPTKPWR-RW 425
            R     + WR RW
Sbjct: 136 WRR---GRLWRQRW 146


>12_02_0030 +
           12469707-12469902,12470337-12470658,12472208-12472245,
           12472486-12473573
          Length = 547

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 252 RSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 416
           RS EA  +   +    GR  A + RV GGG+   G+GA   +  G       + W
Sbjct: 71  RSDEARPERRRQEGAGGRG-AGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLW 124


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 408 SWGRTYVHHDTCYRRHPDRTYEYHH 334
           SWGR   H D   RR P R+  +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,387
Number of Sequences: 37544
Number of extensions: 426209
Number of successful extensions: 1668
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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