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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021022
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597...    59   5e-09
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    48   9e-06
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    30   2.5  
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739...    29   4.4  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    29   4.4  
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304...    29   5.8  
03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700     29   5.8  
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758...    28   7.6  

>04_04_1698 -
           35458500-35458547,35458919-35458988,35459626-35459759,
           35460671-35460712,35460786-35460824
          Length = 110

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 534 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 707
           +G+R  V  G K G + ++G  +    G W G+  DEP+GK+DG V G+R+F+CP+  G 
Sbjct: 28  VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECPQGHGA 87

Query: 708 FSR 716
             R
Sbjct: 88  IVR 90


>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +3

Query: 525 SFIIGERVWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPI-GKNDGSVAGVRYF-QCP 692
           +F +G+RV   G   + G + Y+G     PG+W G+  D    G++DGS+AG RYF    
Sbjct: 5   AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAG 64

Query: 693 EKRGVFSRLTRLT 731
           E+   F+R T L+
Sbjct: 65  ERSASFARPTALS 77


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 734 SSEPSQSRKHTSFLWTLKITNACH 663
           SS+   S  H   LWTLK  N+CH
Sbjct: 502 SSKKEVSIVHNIILWTLKFANSCH 525


>05_05_0098 +
           22373384-22373522,22373566-22373772,22373879-22373953,
           22374611-22374744,22375189-22375674,22375854-22376621,
           22377367-22377594,22378294-22378773
          Length = 838

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +2

Query: 260 MIDKIQANVEEVKKKHSAILSAPQSDENGSSTDTLRKLSDDLSRKHLSA--SSTFSATSM 433
           ++D+I  + + V K +  + S+PQS+  G +TD +   ++D+  KH  +     F+  S+
Sbjct: 200 LVDRIVVSNKSVAKVY--VRSSPQSNSQGQNTDAI-ITTNDVPSKHTPSRYKYYFNIGSV 256

Query: 434 DALWEK 451
           D+  EK
Sbjct: 257 DSFEEK 262


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 670 PATDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPT 551
           P T+P+  P  +  T+PA +P  N V+P     P   P T
Sbjct: 246 PVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPAT 285


>07_03_1452 -
           26629219-26629428,26630113-26630280,26630363-26630425,
           26630499-26630606,26630820-26630932,26631026-26631322,
           26631424-26631502,26631733-26631841,26631927-26631968,
           26632467-26632597,26633482-26633623,26633713-26633828,
           26634121-26634657
          Length = 704

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 404 ASSTFSATSMDAL--WEKHARRLSEL-DYEG 487
           A+S  S   M+AL  WE+HARR  EL D EG
Sbjct: 594 AASAVSVYQMEALETWEQHARRAYELFDKEG 624


>03_05_0047 - 20244899-20245203,20245442-20246438,20246561-20247700
          Length = 813

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 317 LSAPQSDENGSSTDTLRKLSDDLSRKHLSASSTFSATSMDALWEKHARRLSELD 478
           +S   S  NG S+D L   S +L R  +S  + +  T +  L   H R  S+++
Sbjct: 707 ISRKNSGNNGISSDILVNASTELVRTKVSTKTLYYLTKIWLLKNAHERDASDMN 760


>02_02_0184 -
           7581345-7581769,7581880-7582296,7582891-7583661,
           7583894-7584437,7584794-7584961,7585019-7585101,
           7585190-7585631
          Length = 949

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 587 DISNLSRFRTAYPNTFTNNEAISVLCYITLWSEDLRSPVR 468
           ++ NL R    YPN F + E   +  ++ L++ D+R   R
Sbjct: 623 NVENLMRLAKLYPNDFNSGELRDLRHHLCLYTADVREDDR 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,931,626
Number of Sequences: 37544
Number of extensions: 404528
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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