Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021003
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039...    29   3.0  
02_02_0105 + 6810839-6810913,6811005-6811132,6811562-6811764,681...    29   3.9  
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    28   6.8  
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773...    27   9.0  

>07_03_1193 -
           24702135-24702421,24702835-24703160,24703240-24703910,
           24704342-24704421,24704515-24704572
          Length = 473

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +2

Query: 173 TMALTLIMIYGAARGKPAYLLPFFCLQTSTLPSPF*RQLAICV-TCVKSMP*LRRPVAFP 349
           T AL+ +    ++   P  ++   C  T  +   + + LA    +C  S          P
Sbjct: 195 TQALSKLTTPSSSSPAPPLMMSCLCAVTWNVTCTYSQHLASKYPSCCVSFSSFYNDTIVP 254

Query: 350 SAKCCCGCPA 379
            AKC CGC A
Sbjct: 255 CAKCACGCDA 264


>02_02_0105 +
           6810839-6810913,6811005-6811132,6811562-6811764,
           6811829-6811957,6812348-6812506,6812610-6812695,
           6812908-6813042
          Length = 304

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 414 IKAEMTTKARADAGQPQQHFAEGNATGLRNQGMDLTQVTQIASCRQNGDGKVEV 253
           I  E    A    G+P  H  +G   G   + +D +Q+ +I + R+   GK+ V
Sbjct: 220 ICVEPAESAVISGGEPAFHNIQGIGPGFIPEILDRSQIDEIVAAREENKGKMIV 273


>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   SPVSSWSNVGRTGDVLPTPLSNVETR-PSPYSQHASHPSDHSLIYHD 142
           +PVSS+   GR   + PTP +N + R P P S H          YH+
Sbjct: 505 TPVSSFQR-GRAVTMTPTPQNNPQRRPPPPPSPHVPVFKPEEPTYHE 550


>12_01_0833 -
           7730761-7731030,7731171-7731425,7731565-7731736,
           7731873-7732106,7732362-7732495,7734116-7734199,
           7735086-7735376,7735566-7735898,7736351-7736424,
           7736558-7736653,7736876-7737029,7737118-7737221,
           7737325-7737485,7737774-7738087,7738950-7739231,
           7739909-7740210,7740513-7740713,7740924-7741014,
           7741424-7741500,7741595-7741754,7742026-7742110,
           7742194-7742288
          Length = 1322

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 33  GALEMY-CP-HHCQMWKLVP-AHTLNMLHILVTTA*YTMMXMWVRWLQWVPWLSH*L*ST 203
           GAL +Y C   +CQ   + P A T+++L IL+             WL+W  WLS    + 
Sbjct: 550 GALSLYRCVGSYCQTIAVGPIAATMSLLVILLFGGFLIPRPSMPNWLKWGFWLSPLSYAE 609

Query: 204 APLVGNRLI 230
             L GN  +
Sbjct: 610 IGLTGNEFL 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,295
Number of Sequences: 37544
Number of extensions: 288119
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)