Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0017
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0137 - 1082786-1082846,1083850-1084142,1084250-1084550,108...    27   6.0  
01_07_0096 - 41059668-41059886,41059978-41060154,41060575-410607...    27   6.0  

>03_01_0137 -
           1082786-1082846,1083850-1084142,1084250-1084550,
           1084792-1084862,1085008-1085115,1085205-1085279,
           1085298-1085440,1087848-1088097
          Length = 433

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 172 VVLRSVRFIRIPASHPIPVY-LAIEQHLSIGIIKTGRGLRSLSSVSKKLEIVERF 11
           ++L S   I +P       Y + +   L IGII    GL SLS+  + +E+V+R+
Sbjct: 110 ILLSSNMHIILPIRFMSSFYAIVVATFLLIGIIFVPIGLASLSASQEIVELVDRY 164


>01_07_0096 -
           41059668-41059886,41059978-41060154,41060575-41060778,
           41060874-41061089,41061698-41061961,41062413-41062654,
           41062728-41062851,41062852-41062991,41063349-41063397,
           41063735-41063891,41063982-41064130,41064267-41064299,
           41064497-41064575,41064961-41065040,41065438-41065560
          Length = 751

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 62  ASASFYDPNTQVLFYGQVNRDGVGCWNSN 148
           A+ S YDPN  V+     N + +G W SN
Sbjct: 669 AAFSTYDPNRTVIQIDPRNTEEMGFWESN 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,595
Number of Sequences: 37544
Number of extensions: 267791
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)