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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0005
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353...   200   1e-51
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936...   199   1e-51
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833...   198   3e-51
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161...   175   2e-44
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    29   2.4  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    29   2.4  
10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676           29   3.1  
02_02_0309 + 8833709-8834044,8834135-8834289,8834427-8834511,883...    29   4.1  
01_07_0280 + 42452993-42453337,42453778-42453981                       29   4.1  
10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376           28   5.5  
04_03_0612 + 18023354-18023916,18024046-18024805                       28   7.2  

>05_04_0333 +
           20333243-20333329,20335048-20335110,20335276-20335359,
           20335720-20335827,20335969-20336141,20337135-20337246,
           20337468-20337548,20337635-20337697,20337779-20337880,
           20338070-20338194,20338317-20338527,20338625-20338699,
           20338990-20339043
          Length = 445

 Score =  200 bits (487), Expect = 1e-51
 Identities = 94/166 (56%), Positives = 119/166 (71%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK+V CDPSY+P++VRK G+V R I ++ HPI+NT D+ S QII+PQKQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLPNKVRKIGKVARAIAIMSHPIANTNDSHSVQIILPQKQL 327

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
            R SD+YV   SYTH VA KG FIA VST  ET+ PESE++PG+ LLG + + F  + D 
Sbjct: 328 GRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAETDHPESELKPGIDLLGQVDELFFDIYDR 387

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
           YEP+++ S    F+S SYDATTHFETT  DVL +Y   TG+  D S
Sbjct: 388 YEPVNEPSLDNCFVSTSYDATTHFETTVTDVLNMYTLITGKTVDLS 433


>03_02_0544 -
           9362615-9362674,9362783-9362857,9362934-9363144,
           9363279-9363403,9363492-9363593,9363676-9363738,
           9363817-9363897,9364248-9364359,9364454-9364626,
           9364722-9364829,9364909-9364992,9365131-9365193,
           9365652-9365738
          Length = 447

 Score =  199 bits (486), Expect = 1e-51
 Identities = 90/166 (54%), Positives = 117/166 (70%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK+V CDPSY+PD+V+K G+V R IC++ HPI +TKD+ S QII+P+KQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLPDKVKKVGRVARAICIMKHPIPDTKDSHSVQIILPKKQL 327

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
           +R SD+YV   SY H VA KG FIA VST  E + PE E++PG+ LLG + + F  + D 
Sbjct: 328 KRKSDMYVFCCSYAHNVAPKGKFIAFVSTEAEADKPEIELKPGIDLLGPVEETFFDIYDR 387

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
           YEP +   +   F++ SYDATTHFETT  DVL +Y   TG+E D S
Sbjct: 388 YEPTNTADEDNCFVTNSYDATTHFETTVKDVLALYSKITGKELDLS 433


>05_03_0407 +
           13582595-13582681,13583067-13583129,13583289-13583372,
           13583757-13583864,13584018-13584190,13585190-13585301,
           13585424-13585504,13585611-13585673,13585764-13585865,
           13586063-13586187,13586316-13586526,13586614-13586688,
           13586950-13587003
          Length = 445

 Score =  198 bits (483), Expect = 3e-51
 Identities = 92/166 (55%), Positives = 120/166 (72%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK+V CDPSY+P++VRK G+V R I ++ HPI++T D+ S QII+PQKQ+
Sbjct: 268 GVTSEGETAKCKKVVCDPSYLPNKVRKIGKVARAIAIMSHPIASTNDSHSVQIILPQKQL 327

Query: 183 ERNSDIYVSVVSYTHQVAAKGWFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVSVTDY 362
            R SD+YV   SYTH VA KG FIA VST  ET++P+SE++PG+ LLG + + F  + D 
Sbjct: 328 GRKSDMYVFCCSYTHNVAPKGKFIAFVSTEAETDNPQSELKPGIDLLGQVDELFFDIYDR 387

Query: 363 YEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKHGTGEEFDFS 500
           YEP+++ S    F+S SYDATTHFETT  DVL +Y   TG+  D S
Sbjct: 388 YEPVNEPSLDNCFVSTSYDATTHFETTVTDVLNMYTLITGKAVDLS 433


>07_01_1091 -
           10015180-10015236,10015705-10015779,10015874-10016149,
           10016204-10016332,10017070-10017171,10017626-10017688,
           10017776-10017856,10018218-10018314,10019064-10019236,
           10019327-10019434,10019706-10019789,10019985-10020047,
           10020483-10020569
          Length = 464

 Score =  175 bits (427), Expect = 2e-44
 Identities = 92/189 (48%), Positives = 117/189 (61%), Gaps = 23/189 (12%)
 Frame = +3

Query: 3   GVRSGNETAKCKQVYCDPSYVPDRVRKKGQVIRCICLLDHPISNTKDALSTQIIIPQKQV 182
           GV S  ETAKCK+V CDPSY+PD+VRK G+V R I ++ HPI NT D+ S QIIIPQKQ+
Sbjct: 263 GVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFRAIAIMSHPIPNTADSHSVQIIIPQKQL 322

Query: 183 ERNSDI-----------------------YVSVVSYTHQVAAKGWFIAMVSTTVETNDPE 293
            R SD+                       YV   SY+H VA+KG FIA VS   E+ +P 
Sbjct: 323 GRKSDMQITLGLLVISIIVTKECSLVHARYVFCCSYSHNVASKGKFIAFVSAQAESENPA 382

Query: 294 SEIRPGLALLGAIRQKFVSVTDYYEPIDDGSQSQIFISESYDATTHFETTCLDVLKIYKH 473
           +E++PG+ LLG + + F+   D +EP +D S    FIS SYDATTHFE+T +DVL IY  
Sbjct: 383 AELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLSIYTK 442

Query: 474 GTGEEFDFS 500
            TG+  D S
Sbjct: 443 ITGKTVDLS 451


>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +3

Query: 369 PIDDGSQSQIFISESYDATTHFETTCLDVL------KIYKHGTGEEFDFSKVKLELGEED 530
           P  D +      +E  D  T  ETT  DVL      ++  HG G+  D S V ++L   D
Sbjct: 36  PSGDQTLDSDVANEPNDGETEIETTVDDVLSESTHEQVENHGDGDNVDDSSVHIDLDSSD 95


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 174 KQVERNSDIYVSVVSYTHQVAAKG-WFIAMVSTTVETNDPESEIRPGLALLGAIRQKFVS 350
           K+VER   +Y+  ++Y H+    G W ++      E   P +   PG  +   I Q  VS
Sbjct: 542 KKVEREGSMYIGNINYYHRPLRSGKWSVSYEEWQEEVYPPYAN-GPGYVISSDIAQYIVS 600

Query: 351 VTD 359
             D
Sbjct: 601 EFD 603


>10_05_0057 - 8660321-8660422,8661022-8661050,8662286-8662676
          Length = 173

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 474 GTGEEFDFSKVKLELGEEDQ*ITERSHEKIICILLVIQ 587
           G+GEE +  K KLE+GE+    +  S + ++ +L  +Q
Sbjct: 65  GSGEEVERIKSKLEIGEDGSPTSNSSEKTVVELLRALQ 102


>02_02_0309 +
           8833709-8834044,8834135-8834289,8834427-8834511,
           8835009-8835057,8835098-8835272,8835523-8835593,
           8835723-8836351
          Length = 499

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 305 SDFRFRIIGLNSSRDHSNKPTLSCNLVSVGHNRHIDIRIPLNLFLRDYNLSGKCILGVRN 126
           S F    IG  +S   SN     C++ + G+  HI   I    F+R+  +    +  VRN
Sbjct: 339 SPFSGIAIGSEASGGVSNVLVEDCSIFNSGYGIHIKTNIGRGGFIRNITVDNVRMNSVRN 398

Query: 125 GM 120
           G+
Sbjct: 399 GL 400


>01_07_0280 + 42452993-42453337,42453778-42453981
          Length = 182

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 126 WDDLIDKCIVSPDPSYGHGQGHSLGH 49
           +   +D+C  +    +GHG GH  GH
Sbjct: 5   YSSTVDECYETTGRQHGHGHGHGHGH 30


>10_05_0103 - 9186758-9187345,9187395-9187951,9188265-9188376
          Length = 418

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 212 NRHIDIRIPLNLFLRDYNL 156
           N H+D+R+ LNL+L+ Y++
Sbjct: 389 NHHLDLRLSLNLYLQAYDM 407


>04_03_0612 + 18023354-18023916,18024046-18024805
          Length = 440

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 436 KQLVWMCLKFINMVLGKNLISLKSSWNLVKRIS 534
           K L  +CL+++N V+ K++I L  S   +K IS
Sbjct: 223 KALERLCLEYVNGVIDKDMIVLSQSCKNLKSIS 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,548
Number of Sequences: 37544
Number of extensions: 335713
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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