Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A02
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0008 + 13892969-13893179,13893281-13893450                       29   1.6  
01_01_0186 + 1598046-1598234,1599215-1599277,1599359-1599448,159...    29   2.8  
03_02_0662 - 10250235-10250433,10250692-10253105                       28   4.8  
03_01_0340 - 2680860-2682197                                           28   4.8  
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227...    27   8.5  
02_05_0414 + 28778438-28778750,28779240-28779298,28779391-287795...    27   8.5  

>02_03_0008 + 13892969-13893179,13893281-13893450
          Length = 126

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 103 EVSGSIPGSGQVLLGFSTQYYPEVCNFCPQWRHSQSQ 213
           E+  +    GQ+L G   Q  P+  N CP W++ + Q
Sbjct: 62  EICSTYTIKGQMLYGIPLQVLPDGQNQCPSWKYFKFQ 98


>01_01_0186 +
           1598046-1598234,1599215-1599277,1599359-1599448,
           1599968-1600093,1600583-1600726,1600845-1601255,
           1601283-1601364,1601403-1601491,1602250-1602471,
           1602552-1602827,1603116-1603253,1603772-1604077,
           1604203-1604421
          Length = 784

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 119 SPGRVKCYWVFLLNIIPKSAIFARNGGIRNPNGHIWDGTKLGEMRVVQFAISP 277
           S GRV+  W+ L+ I  +  I A   G  +P   +  G+K    +VV   +SP
Sbjct: 566 SSGRVEATWIELVIIEARDLIAADLRGTSDPYVRVHYGSKKKRTKVVYKTLSP 618


>03_02_0662 - 10250235-10250433,10250692-10253105
          Length = 870

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 203 RNPNGHIWDGTKLGEMRVVQFAISPLPNPSAITGVSLCYVMTLL 334
           ++ N H+ D T     R+ +F  SP    S +T  ++ YV+ +L
Sbjct: 418 KDQNNHVKDTTAWTLSRIFEFLHSPTSGFSVVTDANVPYVIQIL 461


>03_01_0340 - 2680860-2682197
          Length = 445

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 188 RNGGIRNPNGHIWDGTKLGEMRVVQFAISPLPNP 289
           R  G   P  H WDG+ +G      FA    P P
Sbjct: 200 RGSGSLEPPRHSWDGSMVGRALACSFACLEEPQP 233


>08_02_0520 -
           18121561-18121821,18122216-18122470,18122560-18122731,
           18122824-18123105,18123159-18123292,18123425-18123508,
           18123611-18123901,18123982-18124314,18124620-18124750,
           18124826-18124930,18125011-18125167,18125248-18125351,
           18125442-18125602,18125800-18126116,18126369-18126650,
           18127011-18127312,18127609-18127699,18127771-18127824,
           18128110-18128186,18128279-18128438,18128545-18128629,
           18129059-18129367,18129514-18129890
          Length = 1507

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 45  TTLLKLPR--WRSCITVRLSF*GLGFDPRVG 131
           T +LK+P   +   ITV LS+  +GFDP VG
Sbjct: 654 TWILKIPISCFEVAITVFLSYYVIGFDPNVG 684


>02_05_0414 +
           28778438-28778750,28779240-28779298,28779391-28779522,
           28779612-28779752,28780213-28780269,28780841-28780981,
           28782037-28782230,28782347-28782413,28782593-28782726,
           28783023-28783089,28783381-28783443,28783848-28784086,
           28784176-28784305,28784384-28784476,28784726-28784929,
           28785116-28785400
          Length = 772

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 290 SAITGVS-LCYVMTLLKSYRQFE*HASTLVKEEIVS 394
           S ++GVS L Y+  LL+ +RQ     STL  EE  S
Sbjct: 202 SLVSGVSKLSYINQLLRRHRQKNTGGSTLTSEEYFS 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,010
Number of Sequences: 37544
Number of extensions: 245111
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)