Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A18
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1341 - 36434098-36436080                                         32   0.23 
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411           27   4.9  
01_01_0757 - 5840736-5842574                                           23   7.3  

>01_06_1341 - 36434098-36436080
          Length = 660

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 24/63 (38%), Positives = 31/63 (49%)
 Frame = +1

Query: 163 IVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYF 342
           I++G     A +   L N GRGEVIR+  N  L E   +V  +  K   + EI IVRD  
Sbjct: 588 ILLGHSEKLA-VAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAER-EI-IVRDVN 644

Query: 343 PIH 351
             H
Sbjct: 645 RFH 647


>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
          Length = 1311

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +1

Query: 181 VSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLVRKGEIGIVRDYFPI 348
           V+  RI+ E + +G  E +  VV+ L     RNVV       RKGE+ +V DY P+
Sbjct: 379 VAVKRISHESR-QGMKEFVAEVVS-LGRLRHRNVVQLLDYCRRKGELLLVYDYMPM 432


>01_01_0757 - 5840736-5842574
          Length = 612

 Score = 23.0 bits (47), Expect(2) = 7.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 388 INLRDANALKLEWGT 432
           + +RD NA+   WGT
Sbjct: 530 VEMRDGNAVSATWGT 544



 Score = 22.2 bits (45), Expect(2) = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 355 RWISLGEPVKVINLRDANA 411
           RW+S G P +  +LRD  +
Sbjct: 507 RWLSSGTPPRRYSLRDTQS 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,936
Number of Sequences: 37544
Number of extensions: 177306
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)