SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A04
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816...    76   2e-14
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626...    75   3e-14
12_01_0722 + 6355972-6359031                                           36   0.022
12_01_0740 + 6646471-6649407                                           34   0.051
12_01_0741 + 6649988-6653065                                           32   0.27 
12_01_0727 + 6446283-6449300                                           31   0.36 
12_01_0715 - 6230393-6231559,6233234-6234553                           31   0.63 
12_02_0589 + 20850249-20850491,20850583-20851839                       30   0.83 
12_01_0736 + 6582371-6585370                                           30   0.83 
12_01_0718 + 6339982-6342981                                           30   0.83 
12_01_0731 - 6516894-6517473,6517485-6519574                           30   1.1  
01_01_0421 + 3181139-3184207                                           29   1.4  
12_01_0686 - 5855216-5858263                                           29   1.9  
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320...    29   1.9  
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996...    29   2.5  
12_01_0708 - 6137865-6140909                                           28   4.4  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    28   4.4  
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842...    28   4.4  
12_01_0714 + 6223269-6226250                                           27   5.8  
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     27   5.8  
01_01_0423 + 3198075-3199010                                           27   7.7  

>06_01_1040 +
           8163654-8163704,8163814-8163935,8164011-8164092,
           8164166-8164213,8164516-8164671,8164747-8164843,
           8164942-8164984,8165375-8165442,8165533-8165617,
           8165698-8165746,8165968-8166040,8166119-8166179,
           8167114-8167180,8167400-8167453,8167537-8167665,
           8168192-8168255,8168366-8168439,8168523-8168576,
           8168696-8168764,8169394-8169483,8169656-8169763,
           8169876-8169923
          Length = 563

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 38/89 (42%), Positives = 57/89 (64%)
 Frame = +2

Query: 206 ILLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRNRQNKP 385
           I LDYS+ R   ET+  L  LA++  +++  + MFSG KIN TE+R+VLH+ALR  +++ 
Sbjct: 63  IFLDYSRQRATGETMEKLFKLAEAAKLKEKIEKMFSGDKINSTENRSVLHVALRAPRDEV 122

Query: 386 ILVNGTDVTPDVNAVLKHMKEFSHQIISG 472
           I  +G +V P+V  V   +K+FS    SG
Sbjct: 123 IKSDGVNVVPEVWGVKDKIKQFSETFRSG 151


>03_06_0143 +
           31962241-31962291,31962385-31962506,31962572-31962671,
           31962775-31962822,31963096-31963251,31963330-31963426,
           31963525-31963567,31963970-31964037,31964139-31964223,
           31964297-31964345,31964566-31964638,31964708-31964768,
           31965417-31965483,31965709-31965762,31965854-31965982,
           31966485-31966548,31966655-31966728,31966793-31966867,
           31966972-31967040,31967759-31967848,31968014-31968121,
           31968251-31968298
          Length = 576

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 38/89 (42%), Positives = 56/89 (62%)
 Frame = +2

Query: 206 ILLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRNRQNKP 385
           I LDYS+ R   ET+  L  LA++  +++  + MF G KIN TE+R+VLH+ALR  +++ 
Sbjct: 69  IYLDYSRQRATGETMEKLFKLAEAAKLKEKIEKMFRGDKINSTENRSVLHVALRAPRDEV 128

Query: 386 ILVNGTDVTPDVNAVLKHMKEFSHQIISG 472
           I  NG +V P+V  V   +K+FS    SG
Sbjct: 129 INSNGVNVVPEVWGVKDKIKQFSETFRSG 157


>12_01_0722 + 6355972-6359031
          Length = 1019

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSG 316
           FN F   +P P  G I LDYS NR  +  ++    L KS  V +A D   SG
Sbjct: 594 FNNFDGAIPVPQKGSITLDYSTNRFSSMPLNFSSYL-KSTVVLKASDNSLSG 644


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 34.3 bits (75), Expect = 0.051
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSG 316
           FN F   +P P  G I LDYS NR  +  ++    L K+  V +A D   SG
Sbjct: 553 FNNFDGAIPVPQKGSITLDYSTNRFSSMPLNFSSYL-KNTVVLKASDNSLSG 603


>12_01_0741 + 6649988-6653065
          Length = 1025

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISL 256
           FN F   +P P  G + LDYS NR  +  + L
Sbjct: 587 FNNFEGTIPIPEQGSVTLDYSNNRFSSMPMPL 618


>12_01_0727 + 6446283-6449300
          Length = 1005

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKS 277
           FN     +P P +G + LDYS NR  +  ++    L K+
Sbjct: 580 FNNIEGAIPIPKEGSVTLDYSNNRFSSLPLNFSTYLTKT 618


>12_01_0715 - 6230393-6231559,6233234-6234553
          Length = 828

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 95  EYYNLNSDKINIPQLFQQEPDRFNKFSLRLPTPNDGEILLDYSKNR 232
           ++ ++ SD   +P   +     FN     +P P +G + LDYS NR
Sbjct: 480 KFTSIGSDHPLLPVYIEFFDLSFNNIEGVIPIPKEGSVTLDYSNNR 525


>12_02_0589 + 20850249-20850491,20850583-20851839
          Length = 499

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +2

Query: 32  SIIKMEPKINLKQDPAFQKLQEYYNLNSDKINIPQLFQQEPDRFNKFS 175
           ++++ME + + K+  A+  L   Y   SD+ N+ +++++  + F KFS
Sbjct: 255 ALVEMEKRASRKERAAYSSLLTLYASLSDRGNLDRVWRKMRETFRKFS 302


>12_01_0736 + 6582371-6585370
          Length = 999

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKS 277
           FNK    +P P  G I LDYS N+  +  ++    L K+
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSSMPLNFSTYLKKT 613


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKS 277
           FNK    +P P  G I LDYS N+  +  ++    L K+
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSSMPLNFSTYLKKT 613


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNR 232
           FN     +P P +G + LDYS NR
Sbjct: 587 FNNIEGTIPIPKEGSVTLDYSNNR 610


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNR 232
           FNKF   +P P +   +LDYS NR
Sbjct: 598 FNKFEGPIPLPQNSGTVLDYSNNR 621


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKSRNVEQARDAM 307
           FN     +P P +G   LDYS N+  +  +  L  L ++   + +R+ +
Sbjct: 592 FNSIEGPIPIPQEGSSTLDYSSNQFSSIPLHYLTYLGETLTFKASRNKL 640


>01_01_0424 +
           3200223-3200634,3200677-3200836,3200987-3201342,
           3201958-3203252
          Length = 740

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNRVDNETISLLLNLAKSRNVEQARD 301
           FN F   +P P +   +LDYS NR  +   ++   L  +   + +R+
Sbjct: 316 FNMFEGTIPLPQNSRFVLDYSNNRFSSIPTNISTQLGYTAYFKASRN 362


>04_04_0529 -
           25997736-25998055,25998441-25998804,25999563-25999675,
           25999880-25999989,26000155-26000311,26000390-26000915,
           26001101-26001265,26002470-26002589,26003022-26003093,
           26003422-26003499,26003965-26004057,26004491-26004647,
           26005351-26005589,26006907-26007050,26007637-26007666,
           26010610-26010993,26011486-26011554,26012353-26012418,
           26013166-26013255,26013583-26013628,26014318-26014419,
           26014552-26014694
          Length = 1195

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 236 DNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIA-LRNRQNKPILVNGTDVT 412
           + ET S +LNL K  N+    DA  +GK+  F+E  A+ H+  L      P+  +  D+ 
Sbjct: 298 ERETSSEILNLGKFANLPLPLDAEQAGKR-GFSEASALEHVKYLAALGPHPVGSDSIDLA 356

Query: 413 PD-VNAVLKHMKEFSH 457
              V AV   +K+ +H
Sbjct: 357 VQYVYAVADKIKKTAH 372


>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKNR 232
           FN     +P P +G  +LDYS N+
Sbjct: 593 FNSIEGPIPVPQEGSTMLDYSSNQ 616


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   SCRTFTARVFSIIKMEPKINLKQDPAFQKLQEYYNLNSDK 121
           SC    A    +++M+ +++L  D     L+++  LNS+K
Sbjct: 539 SCNALVAAKNRLVEMQMELDLANDSKHDALRDFEGLNSEK 578


>01_05_0108 +
           18183250-18183336,18183451-18183962,18184074-18184245,
           18184984-18185022,18185117-18185185,18185281-18185397,
           18185842-18186056,18187085-18187240,18187328-18187527,
           18187927-18188084,18188321-18188417,18188738-18188829,
           18189018-18189191
          Length = 695

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 388 DRFVLSIAESNMKDSSVFSEIDLFT*KHCISGLFYISALG 269
           D  +L  A   +KDS   S ++ F  +   SG+F+++ LG
Sbjct: 551 DNDILIWANKKVKDSGKHSRMESFKDRSLSSGIFFLNLLG 590


>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +2

Query: 209 LLDYSKNRVDNETISLLLNLAKSRNVEQARDAMFSGKKINFTEDRAVLHIALRN 370
           +L  SKN+       ++    K R +  +++   SG   NF++D ++ ++ L N
Sbjct: 272 VLQLSKNKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNN 325


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 197 DGEILLDYSKNRVDNETISLLLNLAK 274
           D  ILLD SKNR+  E  S L NLA+
Sbjct: 717 DALILLDLSKNRLSGEIPSELGNLAQ 742


>01_01_0423 + 3198075-3199010
          Length = 311

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 161 FNKFSLRLPTPNDGEILLDYSKN 229
           FN F   +P P D   +LDYS N
Sbjct: 35  FNMFEGPIPLPRDSGTVLDYSNN 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,833
Number of Sequences: 37544
Number of extensions: 232885
Number of successful extensions: 564
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -