Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A16
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 40 0.003
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 38 0.010
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 36 0.041
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 33 0.29
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 1.2
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 2.0
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.7
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 6.2
03_05_0431 + 24221881-24224586 29 6.2
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 8.3
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 8.3
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 39.9 bits (89), Expect = 0.003
Identities = 30/103 (29%), Positives = 43/103 (41%)
Frame = +1
Query: 79 LIGLNRRKQIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYR 258
LI ++ T + D AKAFD V L L G PD + I++ L
Sbjct: 25 LIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVL 84
Query: 259 VEGTRSRPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLAL 387
+ G + G+ QG LSP LF L + + R E +L +
Sbjct: 85 LHGIPGKWITCKKGLRQGDPLSPYLFILVADVLQRLLERNLQI 127
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 37.9 bits (84), Expect = 0.010
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +1
Query: 121 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 300
L D KAFD + H+ ++ + +MG P + + ++ S S + G + G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 301 VPQGSALSPLLFSL 342
V QG LS LLF L
Sbjct: 514 VRQGVPLSLLLFVL 527
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 35.9 bits (79), Expect = 0.041
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 14/158 (8%)
Frame = +1
Query: 97 RKQIPTGTLFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRS 276
R++ T + D KAFD V + L L G P+ + I+ LS+ + G
Sbjct: 1046 RRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPG 1105
Query: 277 RPRQLTAGVPQGSALSPLLFSLYINDIPRSPETHLAL--------------FADDTAIYY 414
R G+ QG LS LF L + + R E + + +ADDT I Y
Sbjct: 1106 RWICCKKGLLQGDPLSSYLFILVADVLQRLLERNTEIRHAIYQDRPCTTIQYADDTLIIY 1165
Query: 415 SCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAV 528
+ +L + TL Q+ + + IN KS +
Sbjct: 1166 RAEEADVLALK-----ETLLQFSKATGLQINFAKSTMI 1198
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 33.1 bits (72), Expect = 0.29
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +1
Query: 250 RYRVEGTRSRPRQLTAGVPQGSALSPLLFSL---------YINDIPRSPETHLALFADDT 402
R + GT S P + G+ QG LSPLLF L +N R+P +L+ADD
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVLKAMSAGLLDKVNQWSRAPNN--SLYADDA 273
Query: 403 AIYY 414
I++
Sbjct: 274 VIFF 277
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 438 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 578
SS DRS+ P P+ +R PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 627 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 529
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 412 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 546
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 265 GTRSRPRQLTAGVPQGSALSP 327
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 725 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 630
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 447 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 578
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 130 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 216
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,303,434
Number of Sequences: 37544
Number of extensions: 555070
Number of successful extensions: 1531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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