Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A13
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0862 - 7172083-7172931 35 0.075
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 34 0.17
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 25 1.2
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.2
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 30 2.8
12_02_1174 - 26696869-26698191 29 4.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.9
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 4.9
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 29 4.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.6
01_01_0070 - 542603-542686,542803-543441 28 8.6
>07_01_0862 - 7172083-7172931
Length = 282
Score = 35.1 bits (77), Expect = 0.075
Identities = 21/58 (36%), Positives = 24/58 (41%)
Frame = -1
Query: 873 PXXQPXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSP 700
P +P L PLP PLP P PPP P + T LPP PP+ P
Sbjct: 165 PRKKPLLYPPPLPPKKKPLPP-----PSPPPQPPLPEKENT----PLPPLLLPPKKKP 213
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -1
Query: 852 QHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXS 703
QH LP P P PPP P H PP PPQ S
Sbjct: 48 QHHALPHPPPPPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPPPQKPPQGS 97
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 25.4 bits (53), Expect(2) = 1.2
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = -1
Query: 795 PEPPPXXPXHXXQXTLXXKXLPPXXXPP 712
P PPP P H + PP PP
Sbjct: 117 PRPPPPPPPHPPEDPPPHPPHPPDHPPP 144
Score = 24.2 bits (50), Expect(2) = 1.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 843 PLPEXSAPLPXXXXLXPEPPPXXP 772
P P +P+P P PPP P
Sbjct: 68 PAPPTPSPVPEHLHHHPPPPPPVP 91
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/58 (25%), Positives = 20/58 (34%)
Frame = -1
Query: 873 PXXQPXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSP 700
P QP P P P + +PPP P + + PP PP +P
Sbjct: 64 PPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = -1
Query: 873 PXXQPXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSP 700
P QP H P P+ AP P P PP P H Q PP P P
Sbjct: 32 PPQQPAYGHMPPPQ-GAPPPFLAPPPPPPPGPPPPHQPQFNFGPG--PPQQQQPPPPP 86
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = -1
Query: 861 PXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSP 700
P LQ P P P + PPP P H Q + PP PPQ P
Sbjct: 32 PPLQPKPPPHPQQPPQAVVSVGVGPPPPTPQHQQQ-----QQGPPGHAPPQQRP 80
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = -1
Query: 861 PXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSP 700
P +Q P P S P P PPP P + K PP PP P
Sbjct: 173 PVVQPKPQPPPSLQPPSP----PPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPP 222
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = -1
Query: 873 PXXQPXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXP 715
P P P P PLP L P PPP P +L + +PP P
Sbjct: 609 PPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPP-----PSLPNRLVPPPPAP 656
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = -1
Query: 843 PLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPP 712
P P PLP +PPP P L PP PP
Sbjct: 567 PPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPP 610
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = -1
Query: 861 PXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSPXQTXXA 682
P +QH + P P P PPP P PP PP Q+ A
Sbjct: 522 PEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYA 581
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = -1
Query: 843 PLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSP 700
P P PLP P PPP P L + +PP PP P
Sbjct: 586 PPPPPPPPLPNCLVPSPPPPPPPP-----PILPNRSVPPPPPPPPPLP 628
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = -1
Query: 843 PLPEXSAPL-PXXXXLXPEPPPXXPXHXXQXTLXXKXLP-PXXXPPQXSP 700
PLP S P+ P L P PPP P LP P PP P
Sbjct: 211 PLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPGP 260
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 56 FLLTCAIASAAECENATSLSLMIDSLLATYDRESPPVLQNRSQPD 190
+LL A A + SL +DSL +++PPV Q + +P+
Sbjct: 414 YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = -1
Query: 861 PXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSPXQ 694
P L P P S P L P PPP P + PP P P Q
Sbjct: 1140 PPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQ 1195
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/64 (25%), Positives = 20/64 (31%)
Frame = -1
Query: 873 PXXQPXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLPPXXXPPQXSPXQ 694
P P P P+ + P P PP P LPP PP +P +
Sbjct: 75 PAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAE 134
Query: 693 TXXA 682
A
Sbjct: 135 APAA 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,253,673
Number of Sequences: 37544
Number of extensions: 241740
Number of successful extensions: 925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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