Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40035
(890 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 138 7e-33
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 30 2.2
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78) 30 2.2
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.8
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8) 29 3.8
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 5.1
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 8.8
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16) 28 8.8
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 28 8.8
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 8.8
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_47715| Best HMM Match : SEA (HMM E-Value=0.001) 28 8.8
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 138 bits (333), Expect = 7e-33
Identities = 63/94 (67%), Positives = 77/94 (81%)
Frame = +1
Query: 229 GKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
GK ++I+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI+R
Sbjct: 98 IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131
Score = 73.7 bits (173), Expect = 2e-13
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 119 QLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKA 256
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKA
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKA 46
Score = 33.1 bits (72), Expect = 0.31
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 492 PYQDFKGTIEIINDVHILKPGDKVGA 569
P + +GTIEIINDVH++K +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 486 KSLEERGLLWTEAGVVGGNDD*QWG 412
K+LEERGLL+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
Length = 230
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 613 ENGEMFNMLRRLASEAPTLSPGFKMCTSLMISIVPLKSW 497
+N E + LRR+ +E+ T P CTSLM +I +K W
Sbjct: 90 KNAETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 VPKMFHRGCR*RGLATDAADPFLAT-WLQYRAHGKKHNDAQSIK 261
VPKMFH RG+ T+A P + T +L+ R G++ +A ++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNAMRVE 3899
>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
Length = 1009
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 769 ISWLPNWPKERSSYISNSSLETWHENLLV*MSKNFSAKNIPESYTCLTTRPYE 611
I W WP++ ++N LE +L V F K ES L+ R YE
Sbjct: 580 IDWFQAWPEDALEMVANKFLEEVDISLEVKKQCVFMCKYFHESVRMLSERYYE 632
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 440 WAGMTTDNGAMAPGRAGAWTLFSNSL 363
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPA 340
A ++ WT P C H ++ A C PA
Sbjct: 16 AGESNWTRCSPVCKCAHIDKSMAAVCRPA 44
>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
Length = 561
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/73 (26%), Positives = 26/73 (35%)
Frame = +2
Query: 140 KCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRAT 319
+C V A + + F LR S +MG T M K T NCC +
Sbjct: 465 RCMTVKAIGKNPSNGEPMSFELRNCSSSMMGMCTNMCKMMNDTGALTSCEVNCCEGNGCN 524
Query: 320 LASCSPAETSLRS 358
A ++RS
Sbjct: 525 NAGLPTTMPTVRS 537
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.3 bits (60), Expect = 8.8
Identities = 27/90 (30%), Positives = 33/90 (36%)
Frame = -1
Query: 425 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMLCA 246
TD P G W L S SR + S V +L + G S G S L
Sbjct: 390 TDCSLAVPYGKGQWELLSELTSRNRSTSSLVRMAHSL-VTSGQSLWVFGGYSMAYGPLGD 448
Query: 245 SLCFFP*ARYWSHVARNGSAASVASPRYRH 156
+ F WS V N A + +PRY H
Sbjct: 449 IMKFDLVTMNWSQVVTNQLAVVMPTPRYFH 478
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
+ +K HLDN P L K LP + G + + + GDL
Sbjct: 174 KELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +2
Query: 161 DNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPA 340
D +G QQ + + L L+G + R+ + T SR C + SCS
Sbjct: 1 DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60
Query: 341 ETSLRSVTNCWRT 379
SL W T
Sbjct: 61 GNSLLHTHFTWTT 73
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = -1
Query: 599 VQHVEKVGFRSSNFVTGLQDVYIVDDFNSTLEILVGIERAWKKEVF 462
V++ EK GF + + L D+Y+ + + + +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 377 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 211 LQYRAHGKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 384
++ R+HG + + +N LEK+L G + T VE +K +E K+
Sbjct: 25 MELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCIEEKI 82
>SB_47715| Best HMM Match : SEA (HMM E-Value=0.001)
Length = 238
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 492 PY-QDFKGTIEIINDVHILKPGDKVGASEANLLN 590
PY Q+FKG + I+N++++ D+ NL N
Sbjct: 21 PYAQEFKGELTILNEIYVSSLSDRESREYINLSN 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,741,556
Number of Sequences: 59808
Number of extensions: 696087
Number of successful extensions: 1931
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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