SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40034
         (894 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53268| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30)                 34   0.18 
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 31   0.95 
SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   6.7  
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        29   6.7  

>SB_53268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 14/78 (17%)
 Frame = +3

Query: 255 ILADNDINSESKIFEAENKQST--------------YLLNKIPRSRKVNQSYFSSVFSTI 392
           ++AD D  SE K+ E E+KQ                Y + +IPRSR+V Q+Y SSV +T+
Sbjct: 174 LIADTDKMSEEKVVEFESKQKPEIFKEEAAEKQHKDYEILRIPRSREVKQTYVSSVLTTL 233

Query: 393 YSTLITVPVIYKFKPNVI 446
           Y+   T+P+++  KP+++
Sbjct: 234 YAFKATLPLVHDVKPDLV 251


>SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30)
          Length = 337

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = +3

Query: 183 RWPYN*TTAFHEEFKLSEI-LSTVVILADNDINSESKIFEAENKQSTYLLNKIPRSRKVN 359
           RWPY       + F +     ++++IL    +N   KI +   K + Y   K     K  
Sbjct: 87  RWPYGRVVCHIQGFSVPMFGFASILILLLIALNRYVKIIKTRAKYNKYFSPK-----KAI 141

Query: 360 QSYFSSVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVVAFILRIFFY 515
            S F++  + +  TLI +   ++F P  +FC   G   PI   AF +   F+
Sbjct: 142 ASIFAAFCTGVVGTLI-LNTKFEFDPGKLFCFADGGRTPI-PTAFAIGFLFF 191


>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1084

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 627  SCGPCTTTRSAKYWRIFP 574
            SCGPC TTR+A  W+  P
Sbjct: 973  SCGPCNTTRNAPPWQYHP 990


>SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 553 SKITVIDRENSPIFCRSCCSAWATTERCESSC*NIWVDL 669
           SK+T  +R  +   C S C AW    + + +C N W D+
Sbjct: 123 SKVTRRERFTNVPLCSSDCDAWFEACKFDYTCSNNWGDM 161


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 494  KCNYTNWNTSSWTITENNIRLKFIDNRNSN*CRINCTE 381
            +CNY  W T  W + +N  R+    +R +N   I+CT+
Sbjct: 3092 QCNYA-WGTQCWCVDKNGNRIAGTTSRYNN---ISCTD 3125


>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 375 SVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVVAFILRIFFYWIVELFSL 539
           SV++ + S ++ +PV+   K    F  G G C  +C++   + +   +I ++ +L
Sbjct: 683 SVYTVVLSCVVGLPVVLVVKDMPDFTYGLGAC--VCIICTTITLCLMFIPKILAL 735


>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 350 STPGYFIKQISTLFVFCLKNF*FTVDIVI 264
           S  GY + +++T F+FC+K   FT+D+V+
Sbjct: 17  SNDGY-VSEMTTYFMFCVKISSFTLDLVL 44


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 518 DCRIVFIESICRVRSLSLTGKILQYFADLVVVH-GPQLRDVSLRAKIF 658
           D RI+  E+  R+R  S   K+ +YFA L +VH G +  +V +  + F
Sbjct: 132 DRRIIEYEN--RIRQYSTPDKVFRYFASLKIVHSGAEENEVFMTPEDF 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,990,741
Number of Sequences: 59808
Number of extensions: 590163
Number of successful extensions: 1493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -