Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40414| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_26685| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_16657| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18)                 29   5.0  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              29   6.6  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   6.6  
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)                    28   8.7  

>SB_40414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 706 SMLIDWPLRFFGPTLFQHG-FNGKCNSLPIFGPGPXEKASVKPF 834
           S +I    R  G T +  G F+G+   LPI GP P  + +V PF
Sbjct: 284 SNVISSGTRLEGATTYFIGQFDGRIVDLPISGPAPVMRRTVLPF 327


>SB_26685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 706 SMLIDWPLRFFGPTLFQHG-FNGKCNSLPIFGPGPXEKASVKPF 834
           S +I    R  G T +  G F+G+   LPI GP P  + +V PF
Sbjct: 92  SNVISSGTRLEGATTYFIGQFDGRIVDLPISGPAPVMRRTVLPF 135


>SB_16657| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18)
          Length = 1138

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 439 SKENIPISCHNCSYKSYPKSLCQLLKNH 522
           SK+N  + CH C+ + +  + C+  KNH
Sbjct: 149 SKQNSFVRCHRCNKQGHKAADCRCSKNH 176


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 234 PPLYFTNNTSIATLQQNLSH 175
           PP YFT  T +A  Q N SH
Sbjct: 270 PPAYFTQRTLLARFQMNTSH 289


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 456  NFMPQL*L*ILSKIFMPTIEKPCKHKHQFLPFFIMTGNEWNQ 581
            NF+    L  +S++  P  EK C H+H  L   +   +  NQ
Sbjct: 1188 NFLKSRYLYSVSEVHTPLCEKECSHQHHALTCLVFGASTQNQ 1229


>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
          Length = 515

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 415 TMSERLIFSKENIPISCHNCSYKSYPKSLCQLLKNHVNTNTS 540
           T ++++  +KE +P   ++   + Y  S CQL++ HV    S
Sbjct: 391 TNADKIAANKEALPEISNDIHLRVYSLSTCQLVREHVGHRAS 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,859,646
Number of Sequences: 59808
Number of extensions: 526203
Number of successful extensions: 1226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)