Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40023
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33653| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  

>SB_33653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 684 GNYYLTYNFYLGKLNQERPWGGKI 755
           G+YY T++ Y+ +L + + W GK+
Sbjct: 311 GSYYSTFSMYINRLRKHKRWRGKL 334


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 432  KILRDMEITCYFISAY-RFNHSIEFIMLSFVVCLKPLQIYSTVIFNH 569
            +IL+ +    YF+    R N  ++ ++L ++ C++P+  Y+  +F+H
Sbjct: 1197 EILKKINKRLYFLRQLKRANIKVKELLLFYLTCIRPVTEYACPVFHH 1243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,424,129
Number of Sequences: 59808
Number of extensions: 430822
Number of successful extensions: 834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)