Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40021
(381 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 84 3e-17
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 32 0.14
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 29 1.7
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 1.7
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 2.9
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 27 5.2
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44) 26 9.0
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 84.2 bits (199), Expect = 3e-17
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 104
P+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 100 PIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
Score = 67.3 bits (157), Expect = 4e-12
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = -1
Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFP 238
KLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP P
Sbjct: 59 KLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVP 106
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 247
I+D NS + R K+LEERGLL+ +GV GG +
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEE 179
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 3 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 176
+S + +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218
Query: 177 VGIERAWK 200
+ AWK
Sbjct: 219 NAFDMAWK 226
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 108 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 224
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 345 VFTR--GDLVEVRDKLLENKVQAPARPGAIAPCQSSFPPTTPAS 220
VFT GDL + +LL++ + P P + P ++ PTTP +
Sbjct: 1311 VFTSPIGDLTSIIPRLLKHIIAGPLTPLSTRPPTTTTVPTTPVA 1354
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +3
Query: 99 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 248
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1420
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 149 DFNSTL*NLGRDRKSLEERGL-LWTEAGVVGGNDD*HGAMAPGRAGAWTLFSNSLS 313
D T LGR L E G+ W + G +GG D + ++ G GA N LS
Sbjct: 1349 DMQETALELGRQ---LREAGIECWMDVGQMGGGDSLYASIDAGVRGAKNRGHNKLS 1401
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 231 LWAGMTTDMGQWHQDELELGLCSPTVC 311
+WAG M W + LG C PT+C
Sbjct: 779 VWAG-NVGMDSWCVNNCALGNCPPTIC 804
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 101 RSSNLVTGLQDVYIVDDFNSTL 166
R NLVT L DVYI ++ S L
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSIL 316
>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 221 EAGVVGGNDD*HGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 355
EA + GGN H P R A ++ + STR+P +++ T
Sbjct: 784 EAELTGGNARPHTMATPSRTSASVSSGSTKTVRSTRAPETSSEGT 828
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 282 PARPGAIAPCQSSFPPTTPA 223
P P + P Q S+PPT P+
Sbjct: 187 PPTPSSYPPTQPSYPPTAPS 206
>SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44)
Length = 424
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 380 NCCHTSRATLASCSPAETSLRSVTNCWRT 294
N T + +S S A+T VT CWRT
Sbjct: 381 NSSKTHASAPSSASIADTGNYKVTECWRT 409
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 229 TGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDK 113
TGL P S Q LS+ T + ++ D+ PG K
Sbjct: 2095 TGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNSTPGKK 2133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,724
Number of Sequences: 59808
Number of extensions: 262542
Number of successful extensions: 662
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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