Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40011
(360 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 52 1e-07
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 29 0.86
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 29 1.1
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 27 3.5
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_40998| Best HMM Match : Ion_trans_2 (HMM E-Value=2.2e-15) 27 4.6
SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 27 4.6
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_16019| Best HMM Match : AT_hook (HMM E-Value=1) 27 6.1
SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7) 27 6.1
SB_36900| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 26 8.0
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48) 26 8.0
SB_56312| Best HMM Match : Calx-beta (HMM E-Value=2) 26 8.0
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06) 26 8.0
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 52.4 bits (120), Expect = 1e-07
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 39 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXXEGDDI 215
PF N PLRRIPQ YVI TST I + + KLP+H F D+ + +D+
Sbjct: 2 PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDM 56
Query: 216 FATKKEKYVPSEQ 254
F E+ PSEQ
Sbjct: 57 FEEAAEEKKPSEQ 69
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 29.9 bits (64), Expect = 0.65
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +1
Query: 136 NTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRG---CDQSHRS 306
+T + S +R+ + V S+A + +P+KK+NTF+ N++ ++ G S++
Sbjct: 157 STEARVQSENVRNKT-VYSSAMG-LPRIPKKKKNTFY-HNDNKTHSTQTGPWFRAWSNQK 213
Query: 307 PTRQEGAPRIPQSGLRTP 360
R E P+ +SG+ P
Sbjct: 214 RERPEPPPKSTESGIEEP 231
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 29.5 bits (63), Expect = 0.86
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 121 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSR-QNRSEDSRRGCDQS 297
T +NT TSR+ +++SN +++ K + + RNT + +N+ +D + DQ
Sbjct: 82 TKTSRNTK---TSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKPQDKNKPQDQDKPQDQD 138
Query: 298 HRSPTRQEGAPR 333
+ RQ PR
Sbjct: 139 QGARPRQATRPR 150
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 256 QNRSEDSRRGCDQSHRSPTRQEGAPRIPQSGLRTP 360
Q + + +G ++ H QEG ++PQ G +TP
Sbjct: 665 QGQDQSHVQGQEEGHSQDQGQEGTNQVPQQGEKTP 699
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 219 ATKKEKYVPSEQAKP----IRRQSTRL*SKPSEPDPTRRCSADTSK 344
A++K K ++++KP RQ++R SKP + R+ S TSK
Sbjct: 184 ASRKTKTSKTKRSKPQDKQAERQASRKTSKPKDKQAARQASRKTSK 229
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 249 EQAKPIRRQSTRL*SKPSEPDPTRR 323
+ KP R++T SKP+EPD +RR
Sbjct: 1002 DHTKPPLRKTTSNDSKPTEPDSSRR 1026
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 250 SRQNRSEDSRRGCDQSHRSPTRQEGAPRIPQSGL 351
+R + E SR+G + + SPT++E +PQ G+
Sbjct: 703 ARIHSPELSRKGYEDMNLSPTKEEPDHSLPQRGM 736
>SB_40998| Best HMM Match : Ion_trans_2 (HMM E-Value=2.2e-15)
Length = 355
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 267 RRQSTRL*SKPSEPDPTRRCSADTSKRPSD 356
R ++T L + +PD CS+ SK+PSD
Sbjct: 177 RNRTTDLGAPVQKPDAISGCSSTLSKKPSD 206
>SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 267 RRQSTRL*SKPSEPDPTRRCSADTSKRPSD 356
R ++T L + +PD CS+ SK+PSD
Sbjct: 340 RNRTTDLGAPVQKPDAISGCSSTLSKKPSD 369
>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 151 ITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQE 321
IT+RR R + + S P+ KRNT + S S R + R+ T+Q+
Sbjct: 87 ITTRRTRKGFSRNESITNYTPSPPRTKRNTHAAKSRRDSLASYRSSYGASRAQTKQK 143
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 334 SAEHLLVGSGSDGFDHSLVDCLLIGFACSDGTYFSFFVAKMSSPSLRLTVRLT 176
S + L + +G +GF + + + +G DGTY+ F S + T+ LT
Sbjct: 22 SIDLLDILAGMNGFQYEIYESAELGGVKEDGTYYGLFGDIQSEKADLTTLPLT 74
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 246 SEQAKPIRRQSTRL*SKPSEPDPTRRCS 329
S+ AKPIR + SKPS+P RR S
Sbjct: 1773 SKPAKPIRGGKSAKTSKPSKPAKPRRTS 1800
>SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)
Length = 429
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 178 SNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHRSPTRQE 321
S ++ +R T LPQ +S N D D S PT++E
Sbjct: 175 SAMECTPERTDTDLPQADSTARPMSSSNSQNDEPMDLDTSGHRPTQEE 222
>SB_39035| Best HMM Match : Gemini_C4 (HMM E-Value=1.7)
Length = 481
Score = 26.6 bits (56), Expect = 6.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 109 FHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGC 288
FHS++ + S+MIT R + + SN + + KRN +S + + G
Sbjct: 71 FHSSSHPVKTNSVMITERLLVTIDEDTSNQETICYCHTDDKRNRNVISIRFSRNGIKHGP 130
Query: 289 DQ--SHRSPT 312
+ SHR+ T
Sbjct: 131 SKPLSHRTVT 140
>SB_36900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 229 KRNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGAPRIPQSGLR 354
K T+H S + +++ RR D+ + R G+ R+P +R
Sbjct: 104 KIQTYHFSLEAKAKFKRRIIDEPYSMRMRANGSSRMPHLQIR 145
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 26.6 bits (56), Expect = 6.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 61 RYAVFLSA-M*SAPPPEFHSATSN----CQNTSMMITSRRIRSASNVQSNAKRVMTS 216
RY V+ S+ + P +F + + CQNT + T RI + + KRV TS
Sbjct: 331 RYCVYQSSKIVPCPVMQFRAVKQSYHYYCQNTRQLCTGHRIVNVPYYVTEKKRVFTS 387
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 160 RRIRSASNVQSNAKRVMTSLPQKKRNTFHLSRQNRSEDSRRGCDQSHR--SPTRQEGAPR 333
RR+ +S QSN+ R + P+++ R+ +R Q R SP R + +PR
Sbjct: 327 RRVPLSSRQQSNSPRRVPLSPRQQSRPVVRGRRYSQSPNRAPVSQRQRSQSPQRVQASPR 386
>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
Length = 204
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 118 ATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNT 240
AT+NC+ + + + +A +N +R LP+ +R T
Sbjct: 96 ATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTT 136
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 118 ATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNT 240
AT+NC+ + + + +A +N +R LP+ +R T
Sbjct: 118 ATNNCRRRNEQLPKAQRTTAEGATNNCRRRNEQLPKAQRTT 158
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 118 ATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNT 240
AT+NC+ + + + +A +N +R LP+ +R T
Sbjct: 140 ATNNCRRRNEQLPKAQRTTAEGTTNNCRRHNEQLPKAQRTT 180
>SB_56312| Best HMM Match : Calx-beta (HMM E-Value=2)
Length = 311
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 358 ESEGRFEVSAEHLLVGSGSDGFDHSLVDCLLIG 260
+++G E+S+ LLVGSG H + LL+G
Sbjct: 20 DNDGHGEISS--LLVGSGMGNDGHGKISSLLVG 50
>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
Length = 441
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 286 CDQSHRSPTRQEGA--PRIPQSGLR 354
CD+ H+ P+R+E A P+ P+ L+
Sbjct: 137 CDKKHKGPSREEDAVRPKSPKKRLK 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,431,094
Number of Sequences: 59808
Number of extensions: 208151
Number of successful extensions: 681
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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