Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40007
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_58850| Best HMM Match : Pro_Al_protease (HMM E-Value=3.9) 29 2.5
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 2.5
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 29 4.4
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9) 29 4.4
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 29 4.4
SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 7.7
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 28 7.7
SB_49722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 7.7
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 28 7.7
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 7.7
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/32 (93%), Positives = 30/32 (93%)
Frame = +2
Query: 281 TVFGSLIIGYARNPSLKXQWFSYAILGFALSE 376
TVFGSLIIGYARNPSLK Q FSYAILGFALSE
Sbjct: 124 TVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 168 AVRSFQTTSVTKDIDSAAKFIGAGAATVG 254
A R FQT+S +D+DSAAKFIGAGAATVG
Sbjct: 86 ASRGFQTSSAVQDVDSAAKFIGAGAATVG 114
>SB_58850| Best HMM Match : Pro_Al_protease (HMM E-Value=3.9)
Length = 378
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 301 DEGAEDCSNSSSGTSYPTVAAPAP-MNLAAESMSLVTDVVW 182
D+ ++ C ++ YPT P P + A E+M TD W
Sbjct: 20 DQPSDPCQRTADQNPYPTQRDPTPALESAPEAMLDATDTAW 60
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 457 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 350
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -3
Query: 140 ICVWV----VYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFI 24
+C W+ VY KW V G +GD + G H++F+
Sbjct: 225 LCNWLPKQTVYKLKWQRTQGVTPSSDTGPQGDHTSGSGHYLFV 267
>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
Length = 237
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -3
Query: 191 CGLEGPXCRELCRDSITICV-WVVYCCKWSHQC 96
C + C +C T+C W C KWS C
Sbjct: 175 CMCQVEYCMSVCAKLSTVCTKWSTVCTKWSTVC 207
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 268 SGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTALPSVYGWC 122
SGT + P+N+ A S++ T VVW D + T + S +C
Sbjct: 391 SGTIWMDAPQVPPLNVRASSINSTTIVVWWDAIPSNGTDTLIRSYRVYC 439
>SB_42083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 143 TICV-WVVYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCG 15
T+C W CC+WS+ RV G + G H F CG
Sbjct: 107 TVCYHWTTGCCEWSNNIRVRNCGE--FYVYELNGTPHCYFRYCG 148
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -1
Query: 304 DDEGAEDCSNSSSGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTALPSVYGW 125
D+EG E+ ++ + PT AP+ + E ++L + E +PS W
Sbjct: 566 DNEGTEETPQNTESSPAPTSPAPSGPEILKEPLNLPDTEQHDENLTEQTHHIVIPSYASW 625
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -1
Query: 466 RMAVVVFLKVNSLESEE-QQERHHKTEQTHSLRQGETQNGV*EPLLLEGGVP-GIADDEG 293
+M V L V + + + QE + +T + H ++ + G+ +L GG G+AD G
Sbjct: 105 QMLTEVLLSVTNEQLQGIAQEAYDETMKDHVAQELRSSGGL---AVLRGGRDLGVADYGG 161
Query: 292 AEDCSNSSSGTSYPTVAAPAPMNLAAE 212
++ S+S S P P P +A E
Sbjct: 162 SDSESDSESEEESPEEEKPRPHPVADE 188
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = +2
Query: 35 NAVCRQTDRPC---SQVCHLLQLCTGATTCSSTPPIH---RW*CCPYTALCS 172
+ VC T C S C + TG C +H +W CCP +LCS
Sbjct: 156 STVCPDTLTRCPAGSTCCPSVFSLTGFGCCVMPNAVHCQDKWHCCPMGSLCS 207
>SB_49722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 193 RSLRTLTLLPNSLVLVQRQWDSWFRSWNWNSLRLPHHRLCQEPLPQXAVVL 345
RS LT L N ++ QR W S ++ W W + + L Q V++
Sbjct: 42 RSCGVLTTLYNKII-TQRTWPSEWKWWEWTPVFKRENPLLQSNFKPVTVLI 91
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 245 RCTSTNEFGSRVNVLSDRCGLEGPXCRELCRDSITICV 132
R T T +FG +VN+ S LEG R+ D+ + V
Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNFVTV 53
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 445 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 353
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 301 DEGAEDCSNSSSGTSYPTVAAPAP-MNLAAESMSLVTDVVW 182
D+ ++ C ++ YPT P P + A +M TD W
Sbjct: 26 DQPSDPCQRTADQNPYPTQGDPTPALESAPAAMPDATDTAW 66
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 402 WRSCCSSLSKLFTFKNTTTAILHMRFQCILSGVDSQESNVWKPYPHSDAR 551
W + C+S SK + +TT H C L G E W P PH+ R
Sbjct: 156 WDNTCTSHSKC---QGSTT---HSIRPCTLQGRSPIEPTPWSPTPHTTGR 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,390,845
Number of Sequences: 59808
Number of extensions: 460116
Number of successful extensions: 1643
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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