Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40006
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_51563| Best HMM Match : C1_4 (HMM E-Value=2) 32 0.35
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 30 1.4
SB_3981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4) 29 3.3
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 4.3
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 28 5.7
SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041) 28 5.7
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_16213| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_15855| Best HMM Match : BNR (HMM E-Value=1.5) 27 7.6
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 32.7 bits (71), Expect = 0.20
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +2
Query: 278 AISTTARFSSIENATAP-GKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGCSARKD 454
+++TT FS I+ +P G +S A S+SP T+ S A+ +S + S +TD S+ D
Sbjct: 594 SVATTTSFSLIQEGVSPSGNLS-----ASSSSPSTSVSDAAVSSYLSSKPATDASSSAYD 648
Query: 455 SRI 463
S I
Sbjct: 649 SSI 651
>SB_51563| Best HMM Match : C1_4 (HMM E-Value=2)
Length = 322
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 291 LPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLP 401
+PD+P S TPL A P P P P H P P P
Sbjct: 17 IPDTPYSPTPLTVALSPYLPSCPHPCH--APLPVSQP 51
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 37 GCFPAPLPATMPRHSRVPPSIPS 105
G P P P T P RVPP+IPS
Sbjct: 775 GAPPPPPPPTKPATPRVPPNIPS 797
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = +2
Query: 8 NHHAVTHRFGAVFQHHFRQQCHATAECHHRYHRFMPANRGV 130
+HH H HH Q H + HH + + N G+
Sbjct: 236 HHHHKQHHHQQQRHHHHEQHHHQQQQHHHHHEHIIITNNGI 276
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 254 STGQGSAGAISTTARFSSIENATA---PGKV-SGLPAIARSASPVTTFSIASAASPVVS 418
ST G+A + + A SSI AT+ PG S P A S++P SI A P VS
Sbjct: 1024 STTPGAAPSSTPGAAMSSIPGATSSSTPGAASSSTPGAAPSSTPGAASSITRRADPSVS 1082
>SB_3981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -2
Query: 486 AAYSHLPPILESFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLP 328
A S LP ++ RA +K T D ADA+EKV+T ++ AGK P
Sbjct: 2 AVKSTLPEATDNGRAA-----LKPATPDGADAVEKVLTVSGNIPDAGKSPPTP 49
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 329 GKVSGLPAIARSASPVT-TFSIASAASPVVSLISTDGCSARKDSRIGGRWL 478
G SG+P I +S+SP+T T S+ A+ V I+ DS + G+++
Sbjct: 3846 GVSSGIPPILKSSSPITETVSVPENAANAVFRIADSSTRLFVDSGMVGQYV 3896
>SB_25509| Best HMM Match : PWP2 (HMM E-Value=4.4)
Length = 582
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 435 PSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM 307
PS+E+K T + + K++ EAD+ K E V+++M
Sbjct: 261 PSIELKTTLHETTNIFPKMIKKEADIGPENKKEDETQDVSYNM 303
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 290 TARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLIST 430
T+ S + ++T P + +P+I+ S SP T ++ A+ + L ST
Sbjct: 242 TSATSVVFDSTTPNATTPVPSISASISPNVTINMTRGANSTMILPST 288
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 88 PPSIPSLHARQPWRKSSGY*FYCVETT-VQCGGVPAPDRP**TAPLTSPASLPTPD*HRA 264
PPS S W +S + FY + ++ + DRP P ++P +PD R+
Sbjct: 446 PPSHESPRNADGWEQSGLFEFYKAKLPFLKQRDLTKKDRP---VPPSTPPKKTSPDQSRS 502
Query: 265 GQRGGNQHYCQILQHRKRH 321
R H R+RH
Sbjct: 503 RSRSPRSHRSTSRSPRRRH 521
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 279 QSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGVPRGRIP 458
Q++LLP P + P P +P P PP P+ PH PPT P IP
Sbjct: 231 QASLLPLIPNTSIPPTPTPHTSIPPTPTPHTSIPPTPT--PHTS----IPPTPTPHTSIP 284
>SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)
Length = 428
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 414 TTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPV 256
TT DAA+ ++VT DL+ +P M+ +L + L L P+
Sbjct: 76 TTNDAANQSSQIVTTSLDLSTVYSQSPIPIVTTTEMVRSLMLNLSTDPLQDPI 128
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 5.7
Identities = 24/79 (30%), Positives = 30/79 (37%)
Frame = +3
Query: 258 PGRAARGQSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ**V*SPPTG 437
P A Q P +P + P A P +P P + PP P PH + PP G
Sbjct: 412 PPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPHPRVPP-PG-APHPR----VPPPG 465
Query: 438 VPRGRIPESAADGCRQRSP 494
P R+P A R P
Sbjct: 466 APHPRVPPPGAPHPRVPPP 484
>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 35 GAVFQHHFRQ--QCHA-TAECHHRYHRFMPANRGVNHRV 142
G++ FRQ +C A CHH+ H+ +P G+N ++
Sbjct: 166 GSLLYGLFRQGLKCEACNMNCHHKCHKHVPNLCGINQKL 204
>SB_16213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 35 GAVFQHHFRQQCHATAECHHRYHRFMPANRGVNHRVTDFIASKPQFN 175
GA + + C T + HRY++ +P N+ N VT + P N
Sbjct: 3 GATLATYAQAPCRLTVKSTHRYNKSLPPNKRRNW-VTPQYLNDPMIN 48
>SB_15855| Best HMM Match : BNR (HMM E-Value=1.5)
Length = 287
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 251 ISTGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIAS 397
+S +G++ ++ ++ F S++ ATA SG+P S +P + +++S
Sbjct: 69 VSRDRGASWSVISSKHFRSVQKATALIMASGVPDNLVSDTPSSMSAVSS 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,116,365
Number of Sequences: 59808
Number of extensions: 483047
Number of successful extensions: 1721
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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