Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40003
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        31   1.2  
SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               28   8.1  
SB_7280| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 255 KFPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRND 368
           K P+ADD++ S+Y+    S    N   + Q  VGG ND
Sbjct: 2   KLPFADDVSSSIYRREMMSRRGGNLVVMIQMDVGGDND 39


>SB_24400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 21/47 (44%), Positives = 26/47 (55%)
 Frame = +3

Query: 369 DPPSPVYQSPYGGGTWRSYSKAQKVHMQDAYCFPQCSSAFSLPLYNP 509
           D    VYQS Y   T++S  K QK HM     F  CS+A+ LP+Y P
Sbjct: 212 DVSKNVYQSTY---TYQSCVK-QKEHM-----FSVCSNAYGLPVYFP 249


>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 299

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +3

Query: 291 YQAGTDSSISENAYQLPQYYVGGRNDD--PPSPVYQSPYGGGTWRSYSKAQKVHMQDAY 461
           Y AGT +       Q   Y    R  D  PP P   + Y   T++ +   Q  + +DAY
Sbjct: 66  YSAGTTAYAQSAPSQGSGYGYTARQQDAPPPPPPTNTSYQAATYQPHHGTQTFYERDAY 124


>SB_7280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
 Frame = +1

Query: 127 KIQNSVNFKMFKHQLSSRNVHSYQTTVVPRSNQQILSAAEQRASFHGLMI*----THQCI 294
           ++ +  ++K+        +V SYQ T V     Q+ S      ++    +     TH   
Sbjct: 127 RVTHVASYKVTHAAYRVTHVASYQVTHVAYRATQLTSYKVTHVAYRVTHVTSYKVTHVAY 186

Query: 295 RPALIVQYQKTHINYHSTMLVEGMMILHPLY 387
           R   +  YQ TH+ Y +T  V    + H  Y
Sbjct: 187 RVTHVASYQVTHVAYRATQ-VTSYKVTHAAY 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,860,548
Number of Sequences: 59808
Number of extensions: 471876
Number of successful extensions: 1241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)