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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10413
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)              170   1e-42
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                   46   3e-05
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   45   6e-05
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               38   0.013
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              34   0.16 
SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)                   33   0.36 
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.36 
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)              31   0.83 
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         29   3.3  
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 29   4.4  
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score =  170 bits (414), Expect = 1e-42
 Identities = 74/98 (75%), Positives = 86/98 (87%)
 Frame = +1

Query: 508 EQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTG 687
           EQVRQHL+RLPSIDP TRT+++CGFPNVGKSSF+NK+TRADV+VQPYAFTTKSL+VGH  
Sbjct: 67  EQVRQHLSRLPSIDPNTRTLLVCGFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMD 126

Query: 688 YKYLRWQVIDTPGILDHPLEETQCYEMPAVTAFGSSQS 801
           YKYLRWQV+DTPG+LDHPLEE    EM A+TA    +S
Sbjct: 127 YKYLRWQVVDTPGVLDHPLEERNTIEMQAITALAHLRS 164



 Score = 74.9 bits (176), Expect(2) = 1e-15
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +2

Query: 263 PKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNV 382
           P   DVHPFYADLMNVLYDKDHYKL LGQ+NTAR+LID +
Sbjct: 13  PTAKDVHPFYADLMNVLYDKDHYKLALGQINTARNLIDKM 52



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 57  MSLYNFKKIAVVPTAKD 107
           M+ YNFKKI VVPTAKD
Sbjct: 1   MAHYNFKKITVVPTAKD 17



 Score = 25.8 bits (54), Expect(2) = 1e-15
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 446 RAALGRMATIMKRQGANLTYLNR 514
           R  + +M TIMKRQ  +L YL +
Sbjct: 46  RNLIDKMCTIMKRQNQSLQYLEQ 68


>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +1

Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILD 735
           + + GFP+VGKS+ + K+T+       Y FTT +   G   Y     Q++D PGI++
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGIIE 122


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%)
 Frame = +1

Query: 577 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILD 735
           GFP+VGKS+ +  +     EV  Y FTT +   G   YK  + Q++D PGI++
Sbjct: 55  GFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIE 107


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +1

Query: 577 GFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGY 690
           GFPN GKS+ +  I+RA   V  Y FTT +  VG   Y
Sbjct: 2   GFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEY 39


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 562 TIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGIL 732
           T+ + GFPNVGKSS IN + R+    V      TKS+       K+++  ++D+PGI+
Sbjct: 457 TVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLD-KHIK--LLDSPGIV 511


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTT 660
           + + GFP+VGKS+ + K+T+       Y FTT
Sbjct: 66  VALIGFPSVGKSTLLTKLTQTQSACASYEFTT 97


>SB_32162| Best HMM Match : Ras (HMM E-Value=4.7e-31)
          Length = 357

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 565 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILDH 738
           +++ G  NVGK+SF+  +T+ ++E  P AF    L +     K+L   + DT G  ++
Sbjct: 9   VVLTGDNNVGKTSFLINLTQNELEGTPTAFANYELGLEVGSQKFL-LDLWDTEGTTEY 65


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 571 ICGFPNVGKSSFINKITRADV-EVQPYAFTTKSLYVGHTGYKYLRWQVIDTPGILDHPLE 747
           + G+PNVGKSS IN +    V +V P A  TK   V        R  ++D PG++ +P  
Sbjct: 172 LIGYPNVGKSSIINTLKAKKVCKVAPIAGETK---VWQYITLMRRIYLVDCPGVV-YPTG 227

Query: 748 ETQ 756
           +T+
Sbjct: 228 DTE 230


>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
          Length = 299

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 517 RQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKSL-YVGH 681
           R  +A LP  D  T TI + G+PNVGKSS IN I ++  V V      TK   YV H
Sbjct: 149 RNAVADLPE-DALT-TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYVCH 203


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 472 HHETARS*SYIPEQVRQHLARLPSIDPYTRTI 567
           H  TAR  S  P Q   H  +LP +DP+ R+I
Sbjct: 521 HSSTARFYSPTPSQSILHACKLPILDPWDRSI 552


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/49 (46%), Positives = 28/49 (57%)
 Frame = +1

Query: 145 LLQSFTSIIKYQEYVGFILEK*NIPSRTSTTDCPELLGIPKVR*CPSIL 291
           L++S+  IIK QE  GFI EK   PS  S  DC E +G P +    SIL
Sbjct: 534 LMKSYDDIIKEQEARGFI-EK--APSTPSLNDCLE-VGSPYLADMGSIL 578


>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1084

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 382 RKRLCETVKIWRFVVSVQTA-QTCGSGSHGHH--HETARS*SYIPEQVRQHLARLPSIDP 552
           +K LCE   I    V++  A +  G G++  H  H    + +  PE  R H +R+  ++ 
Sbjct: 133 KKLLCERDLILEKAVTIAKAMEQAGKGANAFHQAHTIPETGAQTPESARPHQSRVFKMEQ 192

Query: 553 YTRTIIICG 579
             +  + CG
Sbjct: 193 TPQKCMSCG 201


>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 741 WMIQDSRGVYHLPSQIFVTSMTNIQTLCGKRIWLHFHISTCYFINKT 601
           W  Q    VY L   +      +  +L  K+ W+H  +S C  I+K+
Sbjct: 102 WQTQQEASVYKLYHLLLEIHRDDCASLLKKKYWVHPWLSLCGVISKS 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,839,968
Number of Sequences: 59808
Number of extensions: 562710
Number of successful extensions: 1181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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