Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10412
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16337| Best HMM Match : efhand (HMM E-Value=3.7e-16)                97   2e-20
SB_866| Best HMM Match : efhand (HMM E-Value=7.4e-18)                  76   4e-14
SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14)                  73   3e-13
SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)                 56   4e-08
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                52   8e-07
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)                52   8e-07
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)                   48   1e-05
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                42   5e-04
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)             38   0.008
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)                  30   2.1  
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  

>SB_16337| Best HMM Match : efhand (HMM E-Value=3.7e-16)
          Length = 168

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 46/87 (52%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 HKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDV 433
           ++DG I KNDL+A FDSLG+L +++ +++M+ EASGPINFT  LTLF  ++S G+D +DV
Sbjct: 42  NRDGFIDKNDLKAVFDSLGKLVNDEYVEDMLNEASGPINFTMFLTLFGEKIS-GTDPEDV 100

Query: 434 VINAFKTFDEEGK--IDSERLRHALMT 508
           + NAF +FD EGK  ID E+L+   M+
Sbjct: 101 IRNAFGSFDLEGKGSIDEEKLKRLCMS 127



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 159 KPQGKRTGSNVFSMFSQKQVAEFKEAFQLMDHTR 260
           K + +R  SNVF+MF Q Q+ EFKEAF ++D  R
Sbjct: 10  KKKAQRATSNVFAMFEQSQIQEFKEAFNMIDQNR 43


>SB_866| Best HMM Match : efhand (HMM E-Value=7.4e-18)
          Length = 171

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVI 439
           DG I K DL     SLG+  ++  L+EMV E+ GPINFT  LTLF  +++ G+D +DV+ 
Sbjct: 45  DGFIDKEDLHDMLASLGKDPTDGYLEEMVKESPGPINFTMFLTLFGEKLN-GTDPEDVIR 103

Query: 440 NAFKTFDEE--GKIDSERLRHALMT 508
           NAF  FDE+  G+I  + L+ A+M+
Sbjct: 104 NAFACFDEDGNGRIHEDLLKEAMMS 128



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 159 KPQGKRTGSNVFSMFSQKQVAEFKEAFQLMD 251
           K +  R  SNVF+MF Q Q+ EFKEAF ++D
Sbjct: 11  KKRAHRATSNVFAMFDQSQIQEFKEAFNMID 41


>SB_10186| Best HMM Match : efhand (HMM E-Value=3e-14)
          Length = 133

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = +2

Query: 254 HKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASG-PINFTQLLTLFANRMSGGSDEDD 430
           ++DG I K DL+  + SLG+  +++ LD+M+ EASG  INFT  LTLF  +++ G+D +D
Sbjct: 43  NRDGFIDKEDLKDMYASLGKSPNDQFLDDMIEEASGSTINFTMFLTLFGEKLN-GTDPED 101

Query: 431 VVINAFKTFDEEG 469
           V+ NAF  FDEEG
Sbjct: 102 VIKNAFGCFDEEG 114



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 159 KPQGKRTGSNVFSMFSQKQVAEFKEAFQLMDHTR 260
           K + +R  SNVF+MF Q Q+ EFKEAF ++D  R
Sbjct: 11  KKRAQRATSNVFAMFDQTQIQEFKEAFNMIDQNR 44


>SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)
          Length = 322

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = +2

Query: 278 NDLRATFDSLGRLASEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVINAFKTF 457
           +DLR T  SLG+  + +E+D+M+ E     NFT  L++F  RM+  +D +D+++ AF   
Sbjct: 178 DDLRGTLSSLGQKPTFEEIDDMM-EGKPSFNFTSFLSMFGLRMA-NTDPEDIILRAFSCL 235

Query: 458 DE--EGKIDSERLRHALMT 508
           D+  +GK+ ++ LR  L T
Sbjct: 236 DDGGDGKLSAKMLRELLTT 254


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDED 427
           DG I   +L     SLG+  +E EL +M+ E     +G I+F + LT+ A +M   +D +
Sbjct: 14  DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKN-TDSE 72

Query: 428 DVVINAFKTFDEEGK--IDSERLRHAL 502
           + +  AF+ FD++G   I +  LRH +
Sbjct: 73  EEIREAFRVFDKDGNGFISAAELRHVM 99



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQ 379
           +G I   +LR    +LG   +++E+DEM+ EA     G +N+ +
Sbjct: 87  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDE 130


>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 250

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDED 427
           DG I   +L     SLG+  +E EL +M+ E     +G I+F + LT+ A +M   +D +
Sbjct: 14  DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKN-TDSE 72

Query: 428 DVVINAFKTFDEEGK--IDSERLRHAL 502
           + +  AF+ FD++G   I +  LRH +
Sbjct: 73  EEIREAFRVFDKDGNGFISAAELRHVM 99



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQ 379
           +G I   +LR    +LG   +++E+DEM+ EA     G +N+ +
Sbjct: 87  NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYDE 130


>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDED 427
           DG I   +L     SLG+  +E EL +M+ E     +G I+F + LT+ A +M   +D +
Sbjct: 25  DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD-TDSE 83

Query: 428 DVVINAFKTFDEEGK--IDSERLRHAL 502
           + +  AF+ FD++G   I +  LRH +
Sbjct: 84  EEIREAFRVFDKDGNGFISAAELRHVM 110



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 260 DGIIGKNDLRATFDSLGRLASEKELDEMVGEA 355
           +G I   +LR    +LG   +++E+DEM+ EA
Sbjct: 98  NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129


>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
          Length = 213

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
 Frame = +2

Query: 302 SLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDEDDVVINAFKTFDEEG 469
           SLG+  +E EL +M+ E     +G I+F + LT+ A +M G  D D+ +  AF+ FD++G
Sbjct: 3   SLGQNPTEAELQDMINEVDADGNGIIDFPEFLTMMAKKM-GEQDSDEEIREAFRVFDKDG 61

Query: 470 K--IDSERLRHAL 502
              I +  LRH +
Sbjct: 62  NGFISAAELRHVM 74


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
 Frame = +2

Query: 263 GIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDEDD 430
           G I  ++L     SLG+  +E+EL +M+ E     +G I+F + L + A ++   +D ++
Sbjct: 305 GSISSSELAHVMRSLGQNPTEQELKDMIAEVDQDDNGEIDFPEFLQMVAKKIKE-TDTEE 363

Query: 431 VVINAFKTFDE--EGKIDSERLR 493
            + +AFK FD+  +G I S  L+
Sbjct: 364 EIQDAFKVFDKNGDGMISSSELK 386



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 206 TEAGRRVQGGIPANGSHKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA 355
           T+    +Q        + DG+I  ++L+    +LG   ++ E+DEM+ EA
Sbjct: 359 TDTEEEIQDAFKVFDKNGDGMISSSELKLVMSNLGERLTDDEVDEMIREA 408


>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
 Frame = +2

Query: 263 GIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLTLFANRMSGGSDEDD 430
           G +   +L     +LG   +E+E+ EMV E     +G ++F + + L  N+     +E D
Sbjct: 163 GHVTTKELHKAMRTLGFNPTEEEIQEMVNEVDYDGNGVLDFNEFVDLMENQKKPDEEEQD 222

Query: 431 VVINAFKTF--DEEGKIDSERLRHAL 502
           + INAF  F  D++G I++  LR  L
Sbjct: 223 L-INAFHVFDSDDKGYIEASELRDLL 247


>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
          Length = 153

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +2

Query: 230 GGIPANGSHKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPINFTQLLTLFA 397
           GG         G I   +L     SLG+  S++EL +M+ E     +G ++F + L +  
Sbjct: 4   GGFSLFDKDGSGTISNEELEVVMKSLGQNPSDEELQQMIQEVDADGNGEVDFEEFLAMMK 63

Query: 398 NRMSGGSDEDDVVINAFKTFDEEG 469
            +M    D +  +  AF+ FD  G
Sbjct: 64  KQMQ-HRDAEAEMREAFRVFDRNG 86


>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
          Length = 288

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 341 MVGEASGPINFTQLLTLFANRMSGGSDEDDVVINA-FKTFDEEGKIDSERLRHALMTGA 514
           M+GE   P+N T+ L    N+M  G      ++N   K     G   S  +++AL  GA
Sbjct: 166 MIGEFETPMNETEFLAFVKNKMQCGGIRHSALLNKNIKKVAVLGGSGSYAIKNALQAGA 224


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 252 HTRMASSARTTCAPPSTP-WAGSRPRRSSM 338
           H R +   +T+CAPP+ P   G RP RS M
Sbjct: 200 HQRGSPKTKTSCAPPAPPRRIGRRPGRSRM 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,796,217
Number of Sequences: 59808
Number of extensions: 363513
Number of successful extensions: 1356
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)